SMTL ID : 3f0l.1

Crystal structure of oxidized D105N Synechocystis sp. PcyA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: P.19, M.20, E.173, E.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.173, A:E.174, A:E.174 EDO.2: 3 residues within 4Å: Chain A: Y.40, Q.41, Q.66 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.39, A:Q.41, A:Q.66 Water bridges: A:Q.41 EDO.3: 6 residues within 4Å: Chain A: P.43, E.44, W.234, R.237, Y.238, V.242 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.43, A:W.234, A:R.237 Water bridges: A:E.44 EDO.4: 6 residues within 4Å: Chain A: P.122, T.123, Q.124, R.127, G.208 Ligands: EDO.5 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: R.127, H.211 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.211 EDO.6: 5 residues within 4Å: Chain A: Q.124, L.197, Q.201, H.205 Ligands: EDO.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.124 EDO.7: 2 residues within 4Å: Chain A: T.171, R.175 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.175 EDO.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: L.99, P.130, A.132, Y.133, Q.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.190 Water bridges: A:A.132, A:E.195 EDO.10: 4 residues within 4Å: Chain A: N.62, R.63, C.64, Y.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.64 EDO.11: 4 residues within 4Å: Chain A: Q.124, P.130, A.131 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.124, A:Q.124, A:A.131

1 x BLA: BILIVERDINE IX ALPHA(Non-covalent)

BLA.12: 26 residues within 4Å: Chain A: E.76, I.86, H.88, C.89, V.90, G.103, C.104, N.105, V.107, S.114, A.115, I.117, R.149, L.151, P.152, W.154, F.158, F.164, Q.216, N.219, K.221, T.222, V.225, L.226, L.243, F.244 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:I.86, A:I.86, A:V.90, A:N.105, A:V.107, A:V.107, A:A.115, A:I.117, A:I.117, A:L.151, A:W.154, A:F.158, A:F.158, A:F.164, A:K.221, A:K.221, A:T.222, A:V.225, A:V.225, A:L.226, A:L.243 Hydrogen bonds: A:N.105, A:N.105, A:N.105, A:N.105, A:R.149 Water bridges: A:R.149, A:K.221, A:K.221, A:T.222, A:T.222 Salt bridges: A:R.149, A:K.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kohler, A.C. et al., Structural basis for hydration dynamics in radical stabilization of bilin reductase mutants. Biochemistry (2010)

Release Date

2009-10-13

Peptides

Phycocyanobilin:ferredoxin oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phycocyanobilin:ferredoxin oxidoreductase

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