SMTL ID : 3f2a.1

Crystal structure of human Pim-1 in complex with DAPPA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 985: (2E)-3-{3-[6-(4-methyl-1,4-diazepan-1-yl)pyrazin-2-yl]phenyl}prop-2-enoic acid(Non-covalent)

985.1: 16 residues within 4Å: Chain A: L.31, G.32, F.36, V.39, A.52, K.54, L.107, E.108, R.109, D.115, E.158, N.159, L.161, I.172, D.173 Ligands: MG.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.52, A:L.107, A:R.109, A:L.161, A:I.172 Hydrogen bonds: A:D.173 Water bridges: A:D.115 Salt bridges: A:K.54

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: K.54, E.76, L.80, D.173, F.174 Ligands: 985.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qian, K. et al., Hit to lead account of the discovery of a new class of inhibitors of Pim kinases and crystallographic studies revealing an unusual kinase binding mode. J.Med.Chem. (2009)

Release Date

2009-03-10

Peptides

Proto-oncogene serine/threonine-protein kinase Pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene serine/threonine-protein kinase Pim-1

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