SMTL ID : 3f3z.1

Crystal structure of Cryptosporidium parvum calcium dependent protein kinase cgd7_1840 in presence of indirubin E804

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

2 x DRK: 3-({[(3S)-3,4-dihydroxybutyl]oxy}amino)-1H,2'H-2,3'-biindol-2'-one(Non-covalent)

DRK.1: 15 residues within 4Å: Chain A: I.17, G.18, R.19, V.25, A.38, K.40, M.85, E.86, L.87, C.88, E.92, E.135, L.138, I.151 Chain B: P.210 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.17, A:V.25, A:L.138, A:I.151 Hydrogen bonds: A:C.88, A:C.88, A:E.135 Water bridges: A:R.19, A:E.92 DRK.6: 15 residues within 4Å: Chain A: P.210 Chain B: I.17, G.18, R.19, V.25, A.38, K.40, M.85, E.86, L.87, C.88, E.92, E.135, L.138, I.151 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.17, B:V.25, B:L.138, B:I.151 Hydrogen bonds: B:C.88, B:C.88, B:E.135 Water bridges: B:R.19, B:R.19

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: H.65, S.117, Y.121, K.124, L.260 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.117 Water bridges: A:S.117, A:S.117, A:K.124 GOL.3: 5 residues within 4Å: Chain A: H.123, P.186, E.187, E.190, T.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.190 GOL.4: 5 residues within 4Å: Chain A: Y.198, P.206, F.224, T.225 Chain B: H.99 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.198, A:T.225 Water bridges: B:E.95, B:E.95 GOL.5: 4 residues within 4Å: Chain A: Y.11, R.37, Y.72, E.73 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.11, A:R.37, A:R.37, A:E.73 Water bridges: A:Y.72 GOL.7: 5 residues within 4Å: Chain B: H.65, S.117, Y.121, K.124, L.260 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.117 Water bridges: B:S.117, B:S.117, B:K.124 GOL.8: 5 residues within 4Å: Chain B: H.123, P.186, E.187, E.190, T.255 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.123, B:E.190 GOL.9: 5 residues within 4Å: Chain A: H.99 Chain B: Y.198, P.206, F.224, T.225 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:E.95 Hydrogen bonds: B:Y.198, B:T.225 GOL.10: 4 residues within 4Å: Chain B: Y.11, R.37, Y.72, E.73 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.11, B:Y.11, B:R.37, B:R.37 Water bridges: B:Y.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wernimont, A.K. et al., Crystal structure of Cryptosporidium parvum calcium dependent protein kinase cgd7_1840 in presence of indirubin E804. To be Published

Release Date

2008-12-23

Peptides

Calcium/calmodulin-dependent protein kinase with a kinase domain and 4 calmodulin like EF hands: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Calcium/calmodulin-dependent protein kinase with a kinase domain and 4 calmodulin like EF hands