SMTL ID : 3f41.1

Structure of the tandemly repeated protein tyrosine phosphatase like phytase from Mitsuokella multacida

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: D.210, C.239, Y.240, A.241, G.242, M.243, G.244, R.245 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.240, A:A.241, A:G.242, A:M.243, A:G.244, A:R.245 Salt bridges: A:R.245 PO4.2: 8 residues within 4Å: Chain A: D.508, C.537, Q.538, A.539, G.540, A.541, G.542, R.543 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.538, A:A.539, A:G.540, A:A.541, A:G.542, A:R.543 Water bridges: A:D.508, A:H.509 Salt bridges: A:R.543 PO4.7: 8 residues within 4Å: Chain B: D.210, C.239, Y.240, A.241, G.242, M.243, G.244, R.245 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:D.210, B:D.210, B:Y.240, B:A.241, B:G.242, B:M.243, B:G.244, B:R.245 Water bridges: B:R.245 Salt bridges: B:R.245 PO4.8: 8 residues within 4Å: Chain B: D.508, C.537, Q.538, A.539, G.540, A.541, G.542, R.543 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.538, B:A.539, B:G.540, B:A.541, B:G.542, B:R.543 Water bridges: B:H.509, B:H.509 Salt bridges: B:R.543

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: F.264, Q.302, Y.305, D.306 Chain B: K.326 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.302, A:D.306, B:K.326 Water bridges: A:D.265 EDO.4: 3 residues within 4Å: Chain A: V.320, K.323, K.324 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.320 EDO.5: 7 residues within 4Å: Chain A: H.123, E.153, T.191, E.192, E.193, Y.203, R.205 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.123, A:E.153, A:E.192, A:E.193, A:R.205 Water bridges: A:K.154, A:K.154, A:E.193 EDO.6: 2 residues within 4Å: Chain A: Y.226, K.257 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.257 Water bridges: A:A.233, A:H.253 EDO.9: 6 residues within 4Å: Chain A: K.326 Chain B: F.264, Q.302, Y.305, D.306 Ligands: EDO.10 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.302, B:D.306, A:K.326 EDO.10: 5 residues within 4Å: Chain B: F.264, D.265, Y.298, Q.302 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.265 EDO.11: 5 residues within 4Å: Chain B: I.76, M.77, P.78, T.79, D.266 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.79 Water bridges: B:S.263, B:D.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gruninger, R.J. et al., Structural analysis of a multifunctional, tandemly repeated inositol polyphosphatase. J.Mol.Biol. (2009)

Release Date

2009-06-09

Peptides

Phytase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phytase