SMTL ID : 3f42.1

Crystal structure of uncharacterized protein HP0035 from Helicobacter pylori

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-tetramer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: M.39, D.62, A.65, Y.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.69 EDO.2: 3 residues within 4Å: Chain A: E.49 Chain B: K.79, E.82 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Water bridges: B:N.75, B:N.75, B:K.79, B:K.86, B:K.86 Hydrogen bonds: A:E.49 EDO.3: 5 residues within 4Å: Chain A: K.79, E.82 Chain B: L.47, G.48, E.49 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.79 EDO.4: 4 residues within 4Å: Chain A: N.75 Chain B: E.49, L.50, V.51 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.49, B:L.50, A:N.75 EDO.5: 4 residues within 4Å: Chain C: M.39, D.62, A.65, Y.69 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.62, C:Y.69, C:Y.69 EDO.6: 3 residues within 4Å: Chain C: E.49 Chain D: K.79, E.82 6 PLIP interactions: 6 interactions with chain D Water bridges: D:N.75, D:N.75, D:K.79, D:E.82, D:K.86, D:K.86 EDO.7: 5 residues within 4Å: Chain C: K.79, E.82 Chain D: L.47, G.48, E.49 1 PLIP interactions: 1 interactions with chain C Water bridges: C:K.79 EDO.8: 4 residues within 4Å: Chain C: N.75 Chain D: E.49, L.50, V.51 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:E.49, D:L.50, C:N.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of uncharacterized protein HP0035 from Helicobacter pylori. To be Published

Release Date

2008-11-18

Peptides

protein HP0035: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

protein HP0035