SMTL ID : 3f4c.1

Crystal structure of organophosphorus hydrolase from Geobacillus stearothermophilus strain 10, with glycerol bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 6 residues within 4Å: Chain A: Y.99, K.145, H.178, H.206 Ligands: GOL.2, CO.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.99, A:H.178, A:H.206, H2O.1 CO.3: 6 residues within 4Å: Chain A: H.23, H.25, K.145, D.266 Ligands: CO.1, GOL.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.23, A:H.25, A:D.266, H2O.1 CO.5: 6 residues within 4Å: Chain B: H.23, H.25, K.145, D.266 Ligands: GOL.4, CO.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.23, B:H.25, B:D.266, H2O.8 CO.6: 6 residues within 4Å: Chain B: Y.99, K.145, H.178, H.206 Ligands: GOL.4, CO.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Y.99, B:H.178, B:H.206, H2O.8

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: H.25, F.28, Y.30, Y.99, R.230, D.266 Ligands: CO.1, CO.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.230 Water bridges: A:Y.99, A:E.103, A:R.230, A:R.230 GOL.4: 9 residues within 4Å: Chain B: H.25, F.28, Y.30, Y.99, K.145, R.230, D.266 Ligands: CO.5, CO.6 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.30, B:Y.30, B:R.230, B:D.266 Water bridges: B:Y.99, B:R.230, B:R.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hawwa, R. et al., Structural basis for thermostability revealed through the identification and characterization of a highly thermostable phosphotriesterase-like lactonase from Geobacillus stearothermophilus. Arch.Biochem.Biophys. (2009)

Release Date

2009-09-15

Peptides

Organophosphorus hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Organophosphorus hydrolase

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