SMTL ID : 3f5b.1

The crystal structure of aminoglycoside N(6')acetyltransferase from Legionella pneumophila subsp. pneumophila str. Philadelphia 1.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: R.14 Ligands: ACT.2 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.14

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: R.14, D.105, L.111 Ligands: PO4.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.111 Hydrogen bonds: A:D.105 Salt bridges: A:R.14

1 x CHX: CYCLOHEXANE(Non-covalent)

CHX.3: 6 residues within 4Å: Chain A: D.98, L.99, F.100, I.132, P.134, Y.145 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.98, A:F.100, A:I.132, A:P.134, A:Y.145

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 4 residues within 4Å: Chain A: H.42, G.43, D.44, W.160 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.42, A:D.44 Water bridges: A:G.45, A:G.45 FMT.5: 3 residues within 4Å: Chain A: E.12, F.13, F.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.12 FMT.6: 1 residues within 4Å: Chain A: G.30 No protein-ligand interaction detected (PLIP) FMT.7: 2 residues within 4Å: Chain A: G.110, L.111 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.110, A:L.111

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 4 residues within 4Å: Chain A: L.99, R.140, A.141, Y.145 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.140, A:Y.145 Water bridges: A:L.99, A:A.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of aminoglycoside N(6')acetyltransferase from Legionella pneumophila subsp. pneumophila str. Philadelphia 1. To be Published

Release Date

2008-11-18

Peptides

Aminoglycoside N(6')acetyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aminoglycoside N(6')acetyltransferase