SMTL ID : 3f5f.1

Crystal structure of heparan sulfate 2-O-sulfotransferase from gallus gallus as a maltose binding protein fusion.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-trimer

Ligands

3 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.12, D.14, K.15, E.44, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340, R.344 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.44, A:W.62, A:R.66, A:R.66, A:E.153, A:Y.155, A:R.344 Water bridges: A:R.344 GLC-GLC.3: 16 residues within 4Å: Chain B: N.12, D.14, K.15, E.44, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340, R.344 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.44, B:W.62, B:R.66, B:R.66, B:E.153, B:Y.155, B:R.344 Water bridges: B:R.344 GLC-GLC.5: 16 residues within 4Å: Chain C: N.12, D.14, K.15, E.44, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340, R.344 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:E.44, C:W.62, C:R.66, C:R.66, C:E.153, C:Y.155, C:R.344 Water bridges: C:R.344

3 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.2: 20 residues within 4Å: Chain A: V.383, P.384, K.385, T.386, A.387, S.388, T.389, S.390, R.466, S.474, T.556, L.559, Y.581, S.587, H.588, L.589, R.590, K.591, T.592, K.595 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:K.385, A:T.386, A:A.387, A:S.388, A:S.388, A:T.389, A:T.389, A:S.390, A:R.466, A:S.474, A:Y.581, A:Y.581, A:T.592, A:T.592 Water bridges: A:S.390 Salt bridges: A:K.385, A:R.466, A:K.595 A3P.4: 20 residues within 4Å: Chain B: V.383, P.384, K.385, T.386, A.387, S.388, T.389, S.390, R.466, S.474, T.556, L.559, Y.581, S.587, H.588, L.589, R.590, K.591, T.592, K.595 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:K.385, B:T.386, B:A.387, B:S.388, B:S.388, B:T.389, B:T.389, B:S.390, B:R.466, B:S.474, B:Y.581, B:Y.581, B:T.592, B:T.592 Water bridges: B:S.390 Salt bridges: B:K.385, B:R.466, B:K.595 A3P.6: 20 residues within 4Å: Chain C: V.383, P.384, K.385, T.386, A.387, S.388, T.389, S.390, R.466, S.474, T.556, L.559, Y.581, S.587, H.588, L.589, R.590, K.591, T.592, K.595 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:K.385, C:T.386, C:A.387, C:S.388, C:S.388, C:T.389, C:T.389, C:S.390, C:R.466, C:S.474, C:Y.581, C:Y.581, C:T.592, C:T.592 Water bridges: C:S.390 Salt bridges: C:K.385, C:R.466, C:K.595

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bethea, H.N. et al., Redirecting the substrate specificity of heparan sulfate 2-O-sulfotransferase by structurally guided mutagenesis. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-12-16

Peptides

Maltose-binding periplasmic protein, Heparan sulfate 2-O-sulfotransferase 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Maltose-binding periplasmic protein, Heparan sulfate 2-O-sulfotransferase 1