SMTL ID : 3f5u.1

Crystal structure of the death associated protein kinase in complex with AMPPNP and Mg2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 22 residues within 4Å: Chain A: L.19, G.20, S.21, G.22, Q.23, F.24, A.25, V.27, A.40, K.42, I.77, L.93, E.94, V.96, E.100, D.139, E.143, N.144, M.146, I.160, D.161 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Q.23, A:Q.23, A:Q.23, A:A.25, A:K.42, A:E.94, A:V.96, A:E.100, A:E.143, A:D.161, A:D.161 Water bridges: A:D.161 Salt bridges: A:K.42

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.144, D.161 Ligands: ANP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.161, H2O.4

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.63, H.166, K.175 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.63, A:K.167 Salt bridges: A:R.63, A:K.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McNamara, L.K. et al., Structural insight into nucleotide recognition by human death-associated protein kinase. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-03-24

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1