SMTL ID : 3f5v.2 (1 other biounit)

C2 Crystal form of mite allergen DER P 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.56, L.57, E.59, E.91 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:L.57, A:E.59, A:E.91, H2O.2, H2O.4

3 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.2: 6 residues within 4Å: Chain A: R.156, T.157, I.158, Q.181, Y.185, Y.203 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.185 Water bridges: A:R.17 P6G.3: 5 residues within 4Å: Chain A: Q.53, L.55, Q.90, Q.109, F.111 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.53, A:Q.109, A:Q.109 P6G.4: 3 residues within 4Å: Chain A: Y.169, Y.216, Y.218 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.218 Water bridges: A:Y.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chruszcz, M. et al., Crystal structures of mite allergens Der f 1 and Der p 1 reveal differences in surface-exposed residues that may influence antibody binding. J.Mol.Biol. (2009)

Release Date

2009-02-10

Peptides

Der p 1 allergen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Der p 1 allergen

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