SMTL ID : 3f6q.1

Crystal structure of integrin-linked kinase ankyrin repeat domain in complex with PINCH1 LIM1 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

18 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: R.51, A.53 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: T.172 Ligands: IOD.14 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: A.126, R.156, M.160 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: S.52, K.90 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: Q.117, Q.119, V.120 Ligand excluded by PLIP IOD.6: 4 residues within 4Å: Chain A: S.52, H.84, D.86, I.87 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: Q.12, W.24 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: Q.89, N.127 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: W.115 Chain B: C.17 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: D.7, E.15, N.17 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Chain A: N.17 Ligand excluded by PLIP IOD.12: 4 residues within 4Å: Chain A: R.48, L.78 Chain B: F.71 Ligands: PO4.18 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: R.64, N.66 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: F.173 Ligands: IOD.2 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain A: R.166 Ligand excluded by PLIP IOD.16: 1 residues within 4Å: Chain A: P.148 Ligand excluded by PLIP IOD.17: 1 residues within 4Å: Chain A: K.170 Ligand excluded by PLIP IOD.21: 1 residues within 4Å: Chain B: K.61 Ligand excluded by PLIP

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.18: 7 residues within 4Å: Chain A: R.48, S.81, H.82 Chain B: Q.44, R.60, Y.62 Ligands: IOD.12 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.44, B:Q.44, B:Q.44, A:S.81 Water bridges: B:R.60, B:R.60 Salt bridges: B:R.60, A:R.48, A:H.82

2 x ZN: ZINC ION(Non-covalent)

ZN.19: 4 residues within 4Å: Chain B: C.42, C.45, C.63, D.66 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:C.45, B:C.63, B:D.66 ZN.20: 4 residues within 4Å: Chain B: C.14, C.17, H.36, C.39 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.14, B:C.17, B:H.36, B:C.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chiswell, B.P. et al., The structural basis of integrin-linked kinase-PINCH interactions. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-12-02

Peptides

Integrin-linked protein kinase: A
LIM and senescent cell antigen-like-containing domain protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Integrin-linked protein kinase

LIM and senescent cell antigen-like-containing domain protein 1

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