SMTL ID : 3f7j.2 (1 other biounit)

B.subtilis YvgN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 8 residues within 4Å: Chain A: F.25, S.190, P.191, L.192, M.193, Q.194, P.231, K.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.190, A:L.192, A:Q.194, A:K.232 Water bridges: A:K.232 NO3.2: 6 residues within 4Å: Chain A: L.192, G.195, L.198, V.214, A.215, R.238 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:L.192, A:G.195, A:R.238 Water bridges: A:S.213, A:S.213, A:V.214, A:A.215, A:A.215, A:A.215, A:R.238 NO3.3: 5 residues within 4Å: Chain A: D.117, K.118, Y.119, K.120, D.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.119, A:K.120, A:D.121, A:D.121 NO3.4: 3 residues within 4Å: Chain A: A.52, K.55, R.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.100 Water bridges: A:K.55, A:K.55, A:E.57, A:E.57

2 x K: POTASSIUM ION(Non-covalent)

K.5: 3 residues within 4Å: Chain A: W.81, N.82 Ligands: K.6 No protein-ligand interaction detected (PLIP) K.6: 2 residues within 4Å: Chain A: E.83 Ligands: K.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lei, J. et al., Structural and biochemical analyses of YvgN and YtbE from Bacillus subtilis. Protein Sci. (2009)

Release Date

2008-11-25

Peptides

YvgN protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

YvgN protein

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