- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU1: COPPER (I) ION(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.2: 5 residues within 4Å:- Chain A: H.44, H.46, H.61, H.118
- Ligands: CU1.1
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.44, A:H.46, A:H.118, H2O.1, H2O.1
CU.14: 5 residues within 4Å:- Chain B: H.44, H.46, H.61, H.118
- Ligands: CU1.13
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.44, B:H.46, B:H.118, H2O.14, H2O.14
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: H.61, H.69, H.78, D.81
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:H.61, A:H.69, A:H.78, A:D.81, A:D.81
ZN.15: 4 residues within 4Å:- Chain B: H.61, H.69, H.78, D.81
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:H.61, B:H.69, B:H.78, B:D.81, B:D.81
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.4: 5 residues within 4Å:- Chain A: G.88, E.89, D.90, G.91, K.92
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.88, A:D.90, A:G.91, A:K.92, A:K.92
NA.16: 5 residues within 4Å:- Chain B: G.88, E.89, D.90, G.91, K.92
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.88, B:D.90, B:G.91, B:K.92, B:K.92
- 4 x ACY: ACETIC ACID(Non-functional Binders)
ACY.5: 3 residues within 4Å:- Chain A: P.72, E.73, L.124
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.124
- Hydrogen bonds: A:E.73
- Water bridges: A:N.84
ACY.6: 1 residues within 4Å:- Chain A: E.89
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:E.89
- Water bridges: A:E.89
ACY.17: 3 residues within 4Å:- Chain B: P.72, E.73, L.124
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.124
- Hydrogen bonds: B:E.73
- Water bridges: B:N.84
ACY.18: 1 residues within 4Å:- Chain B: E.89
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:E.89
- Water bridges: B:E.89
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 5 residues within 4Å:- Chain A: N.53, G.54, C.55, T.56, R.141
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:C.55, A:T.56
- Water bridges: A:D.11, A:D.11, A:T.56, A:T.56, A:R.141
SO4.8: 3 residues within 4Å:- Chain A: D.74, E.75, N.76
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.75, A:N.76
- Water bridges: A:D.74, A:D.74, A:R.126, A:R.126
SO4.9: 4 residues within 4Å:- Chain A: E.47, F.48, R.113
- Chain B: I.149
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.47
- Water bridges: A:R.113, A:R.113, A:R.113
- Salt bridges: A:R.113
SO4.10: 1 residues within 4Å:- Chain A: N.76
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.76
- Water bridges: A:E.68, A:E.68, A:N.76, A:N.76
SO4.11: 3 residues within 4Å:- Chain A: H.129, E.130
- Ligands: SO4.12
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.130
- Water bridges: A:Q.131, A:N.137
- Salt bridges: A:H.129
SO4.12: 5 residues within 4Å:- Chain A: H.129, E.130, Q.131, N.137
- Ligands: SO4.11
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.130, A:Q.131
- Water bridges: A:E.130, A:Q.131, A:N.137
- Salt bridges: A:H.129
SO4.19: 5 residues within 4Å:- Chain B: N.53, G.54, C.55, T.56, R.141
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:C.55, B:T.56, B:T.56
- Water bridges: B:D.11, B:D.11, B:D.11, B:T.56, B:R.141
SO4.20: 3 residues within 4Å:- Chain B: D.74, E.75, N.76
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.75, B:N.76
- Water bridges: B:D.74, B:E.75, B:R.126
SO4.21: 4 residues within 4Å:- Chain A: I.149
- Chain B: E.47, F.48, R.113
4 PLIP interactions:4 interactions with chain B- Water bridges: B:R.113, B:R.113, B:R.113
- Salt bridges: B:R.113
SO4.22: 1 residues within 4Å:- Chain B: N.76
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.76
- Water bridges: B:E.68, B:E.68, B:N.76, B:N.76
SO4.23: 3 residues within 4Å:- Chain B: H.129, E.130
- Ligands: SO4.24
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.130
- Water bridges: B:Q.131, B:N.137
- Salt bridges: B:H.129
SO4.24: 5 residues within 4Å:- Chain B: H.129, E.130, Q.131, N.137
- Ligands: SO4.23
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.130, B:Q.131
- Water bridges: B:E.130, B:Q.131, B:N.137
- Salt bridges: B:H.129
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, D.S. et al., Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis. J.Mol.Biol. (2009)
- Release Date
- 2009-02-10
- Peptides
- Copper,Zinc Superoxide Dismutase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU1: COPPER (I) ION(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 4 x ACY: ACETIC ACID(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, D.S. et al., Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis. J.Mol.Biol. (2009)
- Release Date
- 2009-02-10
- Peptides
- Copper,Zinc Superoxide Dismutase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A