SMTL ID : 3f7w.1

Crystal structure of putative fructosamine-3-kinase (YP_290396.1) from THERMOBIFIDA FUSCA YX-ER1 at 1.85 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x UNL: UNKNOWN LIGAND

UNL.1: 7 residues within 4Å: Chain A: F.43, M.89, E.90, W.91, V.92, L.201, I.210 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.90, A:V.92, A:V.92, A:V.92 Water bridges: A:E.94, A:E.94

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.15, A.37, D.38 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: Y.233, D.235, R.236 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: R.15, T.40 Ligands: EDO.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.15, A:R.15, A:T.40, A:T.40 EDO.5: 2 residues within 4Å: Chain A: L.63, W.82 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.79 EDO.6: 5 residues within 4Å: Chain A: W.29, K.45, L.57, F.58, E.61 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.29, A:K.45, A:L.57 Water bridges: A:S.26, A:E.61 EDO.7: 4 residues within 4Å: Chain A: T.40, Q.78, E.90 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.90 Water bridges: A:Q.78 EDO.8: 8 residues within 4Å: Chain A: H.113, L.114, G.116, E.186, P.187, P.188, A.189, R.219 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.186, A:E.186 Water bridges: A:A.117, A:P.188, A:A.189, A:R.219

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 6 residues within 4Å: Chain A: D.125, G.126, Y.127, P.132, M.133, D.134 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.125 Hydrogen bonds: A:G.126 Water bridges: A:P.132, A:D.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative fructosamine-3-kinase (YP_290396.1) from THERMOBIFIDA FUSCA YX-ER1 at 1.85 A resolution. To be published

Release Date

2008-11-25

Peptides

putative fructosamine-3-kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

putative fructosamine-3-kinase