SMTL ID : 3f7x.1

Crystal structure of a putative polyketide cyclase (pp0894) from pseudomonas putida kt2440 at 1.24 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

homo-dimer

Ligands

4 x UNL: UNKNOWN LIGAND

UNL.1: 12 residues within 4Å: Chain A: F.33, F.68, M.72, Y.76, E.78, F.98, A.123, N.139, Y.141, W.146 Ligands: UNL.2, EDO.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:E.78, A:E.78, A:N.139 Water bridges: A:N.139, A:N.139, A:Y.140, A:Y.140, A:Y.141, A:Y.141, A:Y.141, A:Y.141 UNL.2: 6 residues within 4Å: Chain A: F.68, K.71, M.72, Y.76, D.108 Ligands: UNL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.108 Water bridges: A:K.71 UNL.9: 12 residues within 4Å: Chain B: F.33, F.68, M.72, Y.76, E.78, F.98, A.123, N.139, Y.141, W.146 Ligands: UNL.10, EDO.11 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:E.78, B:E.78, B:N.139 Water bridges: B:N.139, B:N.139, B:Y.140, B:Y.140, B:Y.141, B:Y.141 UNL.10: 6 residues within 4Å: Chain B: F.68, K.71, M.72, Y.76, D.108 Ligands: UNL.9 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.68 Water bridges: B:A.67, B:K.71

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: Y.29, H.51, F.68, M.69, V.137, N.139 Ligands: UNL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.29, A:H.51, A:N.139 Water bridges: A:N.139 EDO.4: 8 residues within 4Å: Chain A: F.33, G.36, M.38, M.72, N.73, Y.76, R.77, E.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.36, A:E.78, A:E.78 EDO.5: 4 residues within 4Å: Chain A: R.93, Y.128, R.136 Ligands: EDO.16 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.93, A:R.136 Water bridges: A:R.136 EDO.6: 6 residues within 4Å: Chain A: R.77, E.78, R.79, H.101, G.102, Q.103 No protein-ligand interaction detected (PLIP) EDO.7: 7 residues within 4Å: Chain A: D.90, G.91, S.92, I.129, H.130, C.131, G.132 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.90, A:C.131, A:G.132 Water bridges: A:H.130 EDO.8: 7 residues within 4Å: Chain A: E.97, F.98, T.99, P.122 Chain B: R.93, R.136 Ligands: EDO.13 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.93, A:T.99 Water bridges: B:R.93, B:R.93 EDO.11: 7 residues within 4Å: Chain B: Y.29, H.51, F.68, M.69, V.137, N.139 Ligands: UNL.9 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.51, B:N.139 Water bridges: B:N.139 EDO.12: 8 residues within 4Å: Chain B: F.33, G.36, M.38, M.72, N.73, Y.76, R.77, E.78 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.36, B:E.78, B:E.78 EDO.13: 4 residues within 4Å: Chain B: R.93, Y.128, R.136 Ligands: EDO.8 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.93, B:R.136 Water bridges: B:R.136 EDO.14: 6 residues within 4Å: Chain B: R.77, E.78, R.79, H.101, G.102, Q.103 No protein-ligand interaction detected (PLIP) EDO.15: 7 residues within 4Å: Chain B: D.90, G.91, S.92, I.129, H.130, C.131, G.132 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.90, B:C.131, B:G.132 EDO.16: 7 residues within 4Å: Chain A: R.93, R.136 Chain B: E.97, F.98, T.99, P.122 Ligands: EDO.5 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.99, B:T.99, A:R.93 Water bridges: A:R.93, A:R.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative polyketide cyclase. (NP_743055.1) from PSEUDOMONAS PUTIDA KT2440 at 1.24 A resolution. To be published

Release Date

2008-11-25

Peptides

Putative polyketide cyclase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative polyketide cyclase