SMTL ID : 3f8j.1

Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group C222(1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: G.53, D.58, D.60, G.129, H.132 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.53, A:D.60, A:H.132 Water bridges: A:A.52 GOL.2: 6 residues within 4Å: Chain A: D.87, Q.88, K.89, L.90, L.162, W.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.90 Water bridges: A:L.90, A:E.107 GOL.3: 4 residues within 4Å: Chain A: P.137, R.142, P.177, K.183 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.142, A:K.183 GOL.4: 6 residues within 4Å: Chain A: P.9, I.146, D.171, D.172, T.173 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.173, A:T.173 GOL.5: 4 residues within 4Å: Chain A: F.7, G.8, P.120 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.6, A:F.7 GOL.6: 5 residues within 4Å: Chain A: P.120, I.146, K.148 Ligands: GOL.4, GOL.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.148 GOL.7: 4 residues within 4Å: Chain A: N.63, W.115, R.169, R.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.63, A:R.169, A:R.170 GOL.8: 3 residues within 4Å: Chain A: D.114, W.115, R.116 No protein-ligand interaction detected (PLIP) GOL.9: 5 residues within 4Å: Chain A: N.5, R.41, N.43, D.44, Y.47 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.5, A:R.41, A:N.43, A:D.44, A:Y.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications. Epigenetics (2009)

Release Date

2009-01-06

Peptides

E3 ubiquitin-protein ligase UHRF1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase UHRF1

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