SMTL ID : 3f9u.1

Crystal structure of C-terminal domain of putative exported cytochrome C biogenesis-related protein from Bacteroides fragilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

5 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 1 residues within 4Å: Chain A: N.81 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.80, A:N.81, A:N.81 NO3.2: 5 residues within 4Å: Chain A: D.35, V.114 Chain B: L.96, T.97 Ligands: EDO.3 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.97, A:D.35, A:D.35 Water bridges: B:E.98 NO3.4: 5 residues within 4Å: Chain A: S.147, Y.148, A.149, Y.150, D.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.147, A:A.149, A:Y.150 NO3.6: 5 residues within 4Å: Chain A: L.96, T.97 Chain B: D.34, D.35 Ligands: EDO.3 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.97, A:T.97, B:D.35 Water bridges: A:P.95, B:D.35 NO3.7: 2 residues within 4Å: Chain B: H.30, N.81 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.80

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: K.117 Chain B: D.35, K.117 Ligands: NO3.2, NO3.6 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.117, A:K.117, A:K.117 Water bridges: A:Y.36 EDO.5: 6 residues within 4Å: Chain A: I.102, Y.120 Chain B: L.38, E.41, Y.42, Q.45 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.38, B:Y.42, B:Q.45, B:Q.45, A:Y.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of C-terminal domain of putative exported cytochrome C biogenesis-related protein from Bacteroides fragilis. To be Published

Release Date

2008-12-02

Peptides

Putative exported cytochrome C biogenesis-related protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative exported cytochrome C biogenesis-related protein