- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x OAF: 2,2-difluoro-3,3-dihydroxybutanedioic acid(Non-covalent)
OAF.2: 15 residues within 4Å:- Chain A: Y.43, T.45, G.46, A.47, D.58, D.86, C.123, G.124, H.125, R.160, E.190, N.213, V.215, P.239
- Ligands: MN.1
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:Y.43, A:Y.43, A:G.46, A:A.47, A:G.124, A:R.160, A:R.160, A:N.213
- Water bridges: A:D.58, A:K.121, A:K.121
- Salt bridges: A:H.125, A:R.160
- Halogen bonds: A:D.58
OAF.6: 15 residues within 4Å:- Chain B: Y.43, T.45, G.46, A.47, D.58, D.86, C.123, G.124, H.125, R.160, E.190, N.213, V.215, P.239
- Ligands: MN.5
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:Y.43, B:T.45, B:G.46, B:A.47, B:G.124, B:R.160, B:R.160, B:N.213
- Water bridges: B:K.121, B:K.121
- Salt bridges: B:R.160
OAF.8: 15 residues within 4Å:- Chain C: Y.43, T.45, G.46, A.47, D.58, D.86, C.123, G.124, H.125, R.160, E.190, N.213, V.215, P.239
- Ligands: MN.7
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:Y.43, C:Y.43, C:G.46, C:A.47, C:G.124, C:R.160, C:N.213
- Water bridges: C:K.121, C:R.160
- Salt bridges: C:R.160
OAF.10: 15 residues within 4Å:- Chain D: Y.43, T.45, G.46, A.47, D.58, D.86, C.123, G.124, H.125, R.160, E.190, N.213, V.215, P.239
- Ligands: MN.9
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:Y.43, D:T.45, D:G.46, D:A.47, D:D.58, D:G.124, D:R.160, D:R.160, D:N.213
- Water bridges: D:K.121
- Salt bridges: D:R.160
- Halogen bonds: D:D.58
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: M.73, N.76, I.77
- Chain C: R.99, E.102, Q.103, R.106
7 PLIP interactions:4 interactions with chain C, 1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: C:Q.103, C:R.106, C:R.106, A:M.73, A:N.76
- Water bridges: C:R.99, B:H.54
GOL.4: 2 residues within 4Å:- Chain A: G.38, D.40
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Narayanan, B. et al., Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member. J.Mol.Biol. (2009)
- Release Date
- 2009-01-27
- Peptides
- 2,3-dimethylmalate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x OAF: 2,2-difluoro-3,3-dihydroxybutanedioic acid(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Narayanan, B. et al., Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member. J.Mol.Biol. (2009)
- Release Date
- 2009-01-27
- Peptides
- 2,3-dimethylmalate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D