SMTL ID : 3fb1.1

Crystal Structure of Purine Nucleoside Phosphorylase in Complex with Ribose-1-Phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x R1P: 1-O-phosphono-alpha-D-ribofuranose(Non-covalent)

R1P.1: 13 residues within 4Å: Chain A: G.34, S.35, R.86, H.88, Y.90, N.117, A.118, Y.202, M.221, S.222, H.259, V.262 Chain B: F.161 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.35, A:S.35, A:S.35, A:Y.90, A:Y.90, A:A.118, A:Y.202, A:Y.202, A:M.221, A:S.222, A:S.222 Water bridges: A:S.222, A:S.222, A:T.244 Salt bridges: A:R.86, A:H.88, A:H.88 R1P.3: 11 residues within 4Å: Chain B: G.34, S.35, R.86, H.88, Y.90, N.117, A.118, Y.202, M.221, S.222 Chain C: F.161 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:S.35, B:S.35, B:Y.90, B:A.118, B:Y.202, B:M.221, B:S.222, B:S.222 Water bridges: B:Y.90, B:Y.90, B:S.222, B:S.222 Salt bridges: B:R.86, B:H.88, B:H.88 R1P.5: 14 residues within 4Å: Chain A: F.161 Chain C: G.34, S.35, R.86, H.88, Y.90, N.117, A.118, Y.202, M.221, S.222, H.259, V.262 Ligands: ACT.6 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:S.35, C:S.35, C:Y.90, C:A.118, C:Y.202, C:M.221, C:S.222, C:S.222, C:H.259 Water bridges: C:N.117, C:Y.194 Salt bridges: C:R.86, C:H.88, C:H.88, C:H.259

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: A.119, G.120, Y.202, E.203, V.219, G.220, N.245 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.202 Hydrogen bonds: A:G.120, A:N.245 Water bridges: A:A.118, A:E.203, A:V.219 ACT.4: 8 residues within 4Å: Chain B: A.118, G.120, Y.202, E.203, V.219, G.220, M.221, N.245 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.120, B:N.245 Water bridges: B:E.203 ACT.6: 8 residues within 4Å: Chain C: A.118, G.120, Y.202, E.203, V.219, G.220, N.245 Ligands: R1P.5 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:Y.202 Hydrogen bonds: C:G.120, C:N.245, C:N.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D'Muniz Pereira, H. et al., Purine nucleoside phosphorylase from Schistosoma mansoni in complex with ribose-1-phosphate. J.Synchrotron Radiat. (2011)

Release Date

2009-11-24

Peptides

Purine-nucleoside phosphorylase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Purine-nucleoside phosphorylase

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