SMTL ID : 3fbs.1 (1 other biounit)

The crystal structure of the oxidoreductase from Agrobacterium tumefaciens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: I.8, G.9, S.11, Y.12, A.13, V.31, D.32, A.33, G.34, E.35, R.36, R.37, N.38, S.44, H.45, G.77, R.78, V.79, A.107, M.108, G.109, D.112, W.124, G.125, H.130, C.134, H.135, V.228, G.264, D.265, G.271, S.272, V.273, A.276 Ligands: MG.4 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:R.37, A:W.124 Hydrogen bonds: A:G.10, A:S.11, A:A.13, A:A.33, A:G.34, A:E.35, A:E.35, A:R.37, A:H.45, A:H.45, A:R.78, A:V.79, A:V.79, A:D.265, A:G.271, A:V.273 Water bridges: A:G.10, A:S.11, A:G.14, A:D.32, A:N.38, A:N.38, A:N.38, A:N.38, A:R.78, A:R.78, A:G.109, A:V.110, A:V.110, A:S.272, A:A.274 pi-Cation interactions: A:R.78, A:R.78 FAD.5: 35 residues within 4Å: Chain B: I.8, G.9, S.11, Y.12, A.13, V.31, D.32, A.33, G.34, E.35, R.36, R.37, N.38, S.44, H.45, G.77, R.78, V.79, A.107, M.108, G.109, D.112, W.124, G.125, H.130, C.134, H.135, V.228, G.264, D.265, G.271, S.272, V.273, A.276 Ligands: MG.8 36 PLIP interactions: 36 interactions with chain B Hydrophobic interactions: B:R.37, B:W.124 Hydrogen bonds: B:G.10, B:S.11, B:A.13, B:D.32, B:A.33, B:G.34, B:E.35, B:E.35, B:R.37, B:H.45, B:H.45, B:R.78, B:V.79, B:V.79, B:D.265, B:G.271, B:V.273 Water bridges: B:G.10, B:S.11, B:G.14, B:D.32, B:N.38, B:N.38, B:N.38, B:N.38, B:R.78, B:R.78, B:G.109, B:V.110, B:V.110, B:S.272, B:A.274 pi-Cation interactions: B:R.78, B:R.78

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.42, H.43, H.45, E.138 Ligands: SO4.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.43 Water bridges: A:S.42 Salt bridges: A:H.43, A:H.45 SO4.3: 4 residues within 4Å: Chain A: H.43, H.45, G.52 Ligands: SO4.2 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.43, A:H.45 SO4.6: 5 residues within 4Å: Chain B: S.42, H.43, H.45, E.138 Ligands: SO4.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.43 Water bridges: B:S.42 Salt bridges: B:H.43, B:H.45 SO4.7: 4 residues within 4Å: Chain B: H.43, H.45, G.52 Ligands: SO4.6 5 PLIP interactions: 5 interactions with chain B Water bridges: B:H.45, B:E.138, B:E.138 Salt bridges: B:H.43, B:H.45

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 5 residues within 4Å: Chain A: F.129, H.130, C.131, H.135 Ligands: FAD.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.130 MG.8: 5 residues within 4Å: Chain B: F.129, H.130, C.131, H.135 Ligands: FAD.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, R. et al., The crystal structure of the oxidoreductase from Agrobacterium tumefaciens. To be Published (2008)

Release Date

2008-12-23

Peptides

Oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Oxidoreductase

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