SMTL ID : 3fbw.1

Structure of Rhodococcus rhodochrous haloalkane dehalogenase DhaA mutant C176Y

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.1: 10 residues within 4Å: Chain A: N.41, D.106, W.107, F.149, F.168, Y.176, L.209, H.272, Y.273 Ligands: CL.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.149, A:F.149, A:F.168, A:F.168, A:Y.176 Hydrogen bonds: A:N.41, A:D.106

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: N.41, W.107, F.168, F.205, P.206, L.209 Ligands: BEZ.1 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: A.155, D.156, R.159, W.203 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: G.268, P.269 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: G.7, F.8 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: N.119, P.120, E.121, R.122 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: I.4, G.5, N.50 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)

MG.8: 2 residues within 4Å: Chain A: G.19, E.20 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:G.19, H2O.2, H2O.3, H2O.6, H2O.6 MG.9: 1 residues within 4Å: Chain A: R.153 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:R.153, H2O.8, H2O.10, H2O.12, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stsiapanava, A. et al., Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels. Acta Crystallogr.,Sect.D (2010)

Release Date

2009-11-24

Peptides

Haloalkane dehalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Haloalkane dehalogenase