SMTL ID : 3fc6.1

hRXRalpha & mLXRalpha with an indole Pharmacophore, SB786875

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

hetero-2-2-mer

Ligands

2 x REA: RETINOIC ACID(Non-covalent)

REA.1: 11 residues within 4Å: Chain A: I.48, A.51, A.52, Q.55, W.85, F.93, R.96, L.106, A.107, I.125, C.212 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.48, A:A.51, A:A.52, A:W.85, A:F.93, A:F.93, A:F.93, A:I.125 Hydrogen bonds: A:A.107 Salt bridges: A:R.96 REA.3: 16 residues within 4Å: Chain A: F.217 Chain C: V.45, I.48, C.49, A.51, A.52, Q.55, N.86, L.89, F.93, R.96, L.106, A.107, V.122, I.125, C.212 14 PLIP interactions: 12 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:V.45, C:A.52, C:N.86, C:L.89, C:F.93, C:F.93, C:L.106, C:V.122, C:I.125, A:F.217, A:F.217 Hydrogen bonds: C:A.107 Water bridges: C:F.93 Salt bridges: C:R.96

2 x LX2: [4-(3-{[2-chloro-3-(trifluoromethyl)benzyl](2,2-diphenylethyl)amino}propoxy)-1H-indol-1-yl]acetic acid(Non-covalent)

LX2.2: 27 residues within 4Å: Chain B: N.44, F.76, L.79, A.80, S.83, E.86, I.114, M.117, L.118, E.120, T.121, R.124, I.132, F.134, L.135, F.145, L.150, F.154, I.155, I.158, F.159, H.240, Q.243, V.244, L.247, L.254, W.262 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:I.114, B:L.118, B:E.120, B:I.132, B:F.134, B:F.134, B:F.145, B:L.150, B:F.154, B:I.155, B:I.158, B:I.158, B:F.159, B:W.262, B:W.262 Hydrogen bonds: B:N.44, B:N.44, B:L.135 Water bridges: B:R.124, B:K.136 Salt bridges: B:R.124 pi-Stacking: B:F.145 LX2.4: 27 residues within 4Å: Chain D: N.44, F.76, L.79, A.80, S.83, E.86, I.114, M.117, L.118, E.120, T.121, R.124, I.132, F.134, L.135, F.145, L.150, F.154, I.155, I.158, F.159, H.240, Q.243, V.244, L.247, L.254, W.262 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:I.114, D:M.117, D:L.118, D:E.120, D:I.132, D:F.134, D:F.134, D:F.154, D:F.154, D:I.155, D:I.158, D:I.158, D:I.158, D:F.159, D:W.262, D:W.262 Hydrogen bonds: D:N.44, D:N.44, D:L.135 Water bridges: D:R.124, D:K.136 Salt bridges: D:R.124 pi-Stacking: D:F.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Washburn, D.G. et al., Synthesis and SAR of potent LXR agonists containing an indole pharmacophore. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-02-10

Peptides

Retinoic acid receptor RXR-alpha: AC
Nr1h3 protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Retinoic acid receptor RXR-alpha

Nr1h3 protein

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