SMTL ID : 3fcf.1

Complex of UNG2 and a fragment-based designed inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x FCF: 3-[(1E,7E)-8-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-3,6-dioxa-2,7-diazaocta-1,7-dien-1-yl]benzoic acid(Non-covalent)

FCF.1: 15 residues within 4Å: Chain A: G.62, Q.63, D.64, Y.66, C.76, F.77, S.88, N.123, G.165, S.166, Y.167, H.187, S.189, S.192 Ligands: SCN.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:H.187 Hydrogen bonds: A:Q.63, A:D.64, A:F.77, A:S.88, A:N.123, A:N.123, A:S.166, A:Y.167, A:S.189 Water bridges: A:D.64, A:Y.66, A:H.187, A:H.187, A:S.192 pi-Stacking: A:Y.66, A:F.77

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2: 5 residues within 4Å: Chain A: M.25, V.28, R.32, V.44, W.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.32 SCN.3: 5 residues within 4Å: Chain A: Y.66, H.67, G.68, Q.71 Ligands: FCF.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.67, A:G.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, S. et al., Impact of linker strain and flexibility in the design of a fragment-based inhibitor. Nat.Chem.Biol. (2009)

Release Date

2009-04-28

Peptides

Uracil-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uracil-DNA glycosylase

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