SMTL ID : 3fdi.1 (1 other biounit)

Crystal structure of uncharacterized protein from Eubacterium ventriosum ATCC 27560.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.13, K.37, V.104, G.105, R.106, R.156 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.106 Water bridges: A:R.13 Salt bridges: A:R.13, A:R.106, A:R.156 SO4.2: 10 residues within 4Å: Chain A: R.13, E.14, F.15, G.16, S.17, G.18, G.19, H.20, R.133, R.137 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.14, A:G.16, A:S.17, A:G.18, A:G.19, A:H.20 Water bridges: A:R.13, A:R.156 Salt bridges: A:R.137 SO4.4: 5 residues within 4Å: Chain B: R.13, K.37, G.105, R.106, R.156 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.106 Water bridges: B:R.13 Salt bridges: B:R.13, B:R.106 SO4.5: 9 residues within 4Å: Chain B: R.13, E.14, F.15, G.16, S.17, G.18, G.19, H.20, R.137 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.16, B:S.17, B:G.18, B:G.19, B:H.20 Salt bridges: B:R.137 SO4.7: 6 residues within 4Å: Chain C: R.13, K.37, V.104, G.105, R.106, R.156 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.106 Water bridges: C:R.13 Salt bridges: C:R.13, C:R.106, C:R.156 SO4.8: 10 residues within 4Å: Chain C: R.13, E.14, F.15, G.16, S.17, G.18, G.19, H.20, R.133, R.137 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:E.14, C:G.16, C:S.17, C:G.18, C:G.19, C:H.20 Water bridges: C:R.13, C:R.156 Salt bridges: C:R.137 SO4.10: 5 residues within 4Å: Chain D: R.13, K.37, G.105, R.106, R.156 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.106 Water bridges: D:R.13 Salt bridges: D:R.13, D:R.106 SO4.11: 9 residues within 4Å: Chain D: R.13, E.14, F.15, G.16, S.17, G.18, G.19, H.20, R.137 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.16, D:S.17, D:G.18, D:G.19, D:H.20 Salt bridges: D:R.137

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: G.12, R.13, W.168 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: G.12, R.13, W.168 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: G.12, R.13, W.168 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain D: G.12, R.13, W.168 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of uncharacterized protein from Eubacterium ventriosum ATCC 27560. To be Published

Release Date

2009-01-20

Peptides

uncharacterized protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

uncharacterized protein

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