SMTL ID : 3fdz.1 (2 other biounits)

Crystal structure of phosphoglyceromutase from burkholderia pseudomallei 1710b with bound 2,3-diphosphoglyceric acid and 3-phosphoglyceric acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

1 x DG2: (2R)-2,3-diphosphoglyceric acid(Non-covalent)

DG2.1: 16 residues within 4Å: Chain A: R.16, H.17, N.23, R.27, F.28, T.29, G.30, R.68, E.95, Y.98, K.106, R.122, R.123, H.190, G.191, N.192 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:N.23, A:T.29, A:T.29, A:G.30, A:E.95, A:R.96, A:Y.98, A:G.191, A:N.192 Water bridges: A:N.23, A:R.27, A:T.29, A:K.106, A:R.123, A:R.123 Salt bridges: A:R.16, A:H.17, A:R.68, A:K.106, A:K.106, A:R.122, A:R.123, A:H.190

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: I.198, D.202, L.212, Y.222, H.233, Y.235 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.202, A:Y.235 Water bridges: A:H.233, A:H.233, A:Y.235 PEG.4: 7 residues within 4Å: Chain B: I.198, D.202, I.204, L.212, Y.222, H.233, Y.235 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.202, B:D.202 Water bridges: B:H.233, B:H.233

1 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.3: 11 residues within 4Å: Chain B: H.17, R.27, F.28, T.29, G.30, E.95, Y.98, K.106, R.122, R.123, N.192 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:R.27, B:T.29, B:G.30, B:E.95, B:E.95, B:Y.98, B:Y.98, B:N.192 Water bridges: B:R.16 Salt bridges: B:K.106, B:K.106, B:R.122, B:R.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, D.R. et al., An ensemble of structures of Burkholderia pseudomallei 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase. Acta Crystallogr.,Sect.F (2011)

Release Date

2009-01-13

Peptides

2,3-bisphosphoglycerate-dependent phosphoglycerate mutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2,3-bisphosphoglycerate-dependent phosphoglycerate mutase

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