SMTL ID : 3fef.1 (2 other biounits)

Crystal structure of putative glucosidase lplD from bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: F.248, R.271, R.298 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.271, A:R.298 SO4.2: 3 residues within 4Å: Chain A: P.280 Chain C: R.425, S.426 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.425 SO4.4: 4 residues within 4Å: Chain B: V.107, F.248, R.271, R.298 6 PLIP interactions: 6 interactions with chain B Water bridges: B:D.109, B:N.147, B:N.147, B:H.272 Salt bridges: B:R.271, B:R.298 SO4.5: 3 residues within 4Å: Chain B: R.425, S.426 Chain D: P.280 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.425 SO4.7: 4 residues within 4Å: Chain C: V.107, F.248, R.271, R.298 3 PLIP interactions: 3 interactions with chain C Water bridges: C:N.147 Salt bridges: C:R.271, C:R.298 SO4.9: 3 residues within 4Å: Chain D: F.248, R.271, R.298 4 PLIP interactions: 4 interactions with chain D Water bridges: D:D.109, D:N.147 Salt bridges: D:R.271, D:R.298 SO4.10: 3 residues within 4Å: Chain B: P.280 Chain D: R.425, S.426 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.425

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: C.169, E.171, H.206 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:C.169, A:H.206, H2O.1, H2O.1, H2O.6 MG.6: 2 residues within 4Å: Chain B: C.169, H.206 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:C.169, B:H.206, H2O.12, H2O.12, H2O.12 MG.8: 2 residues within 4Å: Chain C: C.169, H.206 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.169, C:H.206, H2O.12 MG.11: 2 residues within 4Å: Chain D: C.169, H.206 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:C.169, D:H.206, H2O.21, H2O.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Crystal structure of putative glucosidase lplD from bacillus subtilis. To be published

Release Date

2008-12-30

Peptides

Putative glucosidase lplD, ALPHA-GALACTURONIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative glucosidase lplD, ALPHA-GALACTURONIDASE

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