- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HC7: (2S)-2-[4'-({dimethyl[2-(phosphonooxy)ethyl]ammonio}acetyl)biphenyl-4-yl]-2-hydroxy-4,4-dimethylmorpholin-4-ium(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.3: 16 residues within 4Å:- Chain A: L.66, L.86, R.88, P.117, E.129, Q.130, Y.131, I.132, P.136, G.230, N.231, L.233, V.247, D.248
- Ligands: AMP.4, MG.5
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:R.88, A:I.132, A:G.230
- Water bridges: A:N.231, A:D.248, A:D.248, A:F.249
- Salt bridges: A:R.88
ADP.10: 16 residues within 4Å:- Chain B: L.66, L.86, R.88, P.117, E.129, Q.130, Y.131, I.132, P.136, G.230, N.231, L.233, V.247, D.248
- Ligands: AMP.11, MG.12
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:R.88, B:E.129, B:I.132, B:G.230, B:D.248
- Water bridges: B:N.231, B:D.248, B:D.248, B:F.249, B:E.250
- Salt bridges: B:R.88
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.4: 13 residues within 4Å:- Chain A: V.58, L.66, L.86, R.88, P.117, E.129, Q.130, Y.131, I.132, P.136, G.230, L.233
- Ligands: ADP.3
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.88, A:E.129, A:I.132, A:G.230
AMP.11: 13 residues within 4Å:- Chain B: V.58, L.66, L.86, R.88, P.117, E.129, Q.130, Y.131, I.132, P.136, G.230, L.233
- Ligands: ADP.10
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.88, B:E.129, B:E.129, B:I.132, B:G.230
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 3 residues within 4Å:- Chain A: N.231, D.248
- Ligands: ADP.3
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.248, H2O.10, H2O.11, H2O.11
MG.12: 3 residues within 4Å:- Chain B: N.231, D.248
- Ligands: ADP.10
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.248, H2O.21, H2O.23, H2O.23
- 4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.6: 4 residues within 4Å:- Chain A: E.229, E.267, Y.270, Y.272
No protein-ligand interaction detected (PLIP)UNX.7: 1 residues within 4Å:- Chain A: F.165
No protein-ligand interaction detected (PLIP)UNX.13: 4 residues within 4Å:- Chain B: E.229, E.267, Y.270, Y.272
No protein-ligand interaction detected (PLIP)UNX.14: 1 residues within 4Å:- Chain B: F.165
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hong, B.S. et al., Crystal structures of human choline kinase isoforms in complex with hemicholinium-3: single amino acid near the active site influences inhibitor sensitivity. J.Biol.Chem. (2010)
- Release Date
- 2008-12-23
- Peptides
- Choline/ethanolamine kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HC7: (2S)-2-[4'-({dimethyl[2-(phosphonooxy)ethyl]ammonio}acetyl)biphenyl-4-yl]-2-hydroxy-4,4-dimethylmorpholin-4-ium(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hong, B.S. et al., Crystal structures of human choline kinase isoforms in complex with hemicholinium-3: single amino acid near the active site influences inhibitor sensitivity. J.Biol.Chem. (2010)
- Release Date
- 2008-12-23
- Peptides
- Choline/ethanolamine kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A