SMTL ID : 3fes.3 (3 other biounits)

Crystal Structure of the ATP-dependent Clp Protease ClpC from Clostridium difficile

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 10 residues within 4Å: Chain A: H.28, I.30, G.32, S.33, E.34, E.70, S.83, R.85, G.120, I.121 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.28, A:S.33, A:S.83, A:I.121 Salt bridges: A:E.34, A:E.34, A:E.70, A:E.70, A:R.85

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 5 residues within 4Å: Chain A: K.54, L.139, D.142, M.144, G.145 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.145 PG4.3: 5 residues within 4Å: Chain A: L.92, M.95, F.96, K.99, Q.116 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.99

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: T.9, R.11, G.106, T.107 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.9, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the ATP-dependent Clp Protease ClpC from Clostridium difficile. To be Published

Release Date

2008-12-16

Peptides

ATP-dependent Clp endopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

ATP-dependent Clp endopeptidase

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