SMTL ID : 3fgv.1

CRYSTAL STRUCTURE OF A PUTATIVE ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE (SPO2313) FROM SILICIBACTER POMEROYI DSS-3 AT 1.30 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

11 x UNL: UNKNOWN LIGAND

UNL.1: 6 residues within 4Å: Chain A: L.38, V.39, T.42, Y.77 Ligands: UNL.2, UNL.3 No protein-ligand interaction detected (PLIP) UNL.2: 6 residues within 4Å: Chain A: Y.77, R.81 Ligands: UNL.1, UNL.3, UNL.4, UNL.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.81 UNL.3: 6 residues within 4Å: Chain A: V.19, H.66, R.81 Ligands: UNL.1, UNL.2, UNL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.66, A:R.81 Water bridges: A:R.81 UNL.4: 6 residues within 4Å: Chain A: V.19, V.64, Q.98 Ligands: UNL.2, UNL.3, UNL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.98 Water bridges: A:V.19, A:V.64 UNL.5: 3 residues within 4Å: Chain A: Q.98 Ligands: UNL.2, UNL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.98, A:Q.98 Water bridges: A:R.81 UNL.8: 8 residues within 4Å: Chain B: L.38, T.42, Y.77 Ligands: UNL.9, UNL.10, UNL.11, UNL.12, UNL.13 No protein-ligand interaction detected (PLIP) UNL.9: 8 residues within 4Å: Chain B: V.19, H.66, Y.77, R.81 Ligands: UNL.8, UNL.10, UNL.11, UNL.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.81 Water bridges: B:Q.98 UNL.10: 9 residues within 4Å: Chain B: V.64, H.66, Y.77, R.81 Ligands: UNL.8, UNL.9, UNL.11, UNL.12, UNL.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.81 Water bridges: B:R.81 UNL.11: 7 residues within 4Å: Chain B: V.35, Q.98 Ligands: UNL.8, UNL.9, UNL.10, UNL.12, UNL.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.98 Water bridges: B:R.81 UNL.12: 8 residues within 4Å: Chain B: V.19, V.64, Q.98 Ligands: UNL.8, UNL.9, UNL.10, UNL.11, UNL.13 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.98 Water bridges: B:S.21, B:V.64 UNL.13: 6 residues within 4Å: Chain B: I.90, Q.98 Ligands: UNL.8, UNL.10, UNL.11, UNL.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.98 Water bridges: B:R.81

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain A: G.36, S.40, R.43, L.53 Chain B: A.106 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.43, A:R.43, B:A.106 Water bridges: A:G.36, A:S.40 EDO.7: 4 residues within 4Å: Chain A: R.43, G.50, A.51, Y.52 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.43, A:A.51 Water bridges: A:R.43 EDO.14: 4 residues within 4Å: Chain B: R.43, G.50, A.51, Y.52 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.43, B:A.51 Water bridges: B:R.43 EDO.15: 5 residues within 4Å: Chain A: A.106 Chain B: G.36, V.39, S.40, R.43 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.40, B:R.43, B:R.43, A:A.106 Water bridges: A:A.106 EDO.16: 3 residues within 4Å: Chain B: R.84, G.85, D.86 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.85, B:D.86, B:D.86 Water bridges: B:D.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of protein of unknown function with ferredoxin-like fold (YP_167536.1) from SILICIBACTER POMEROYI DSS-3 at 1.30 A resolution. To be published

Release Date

2008-12-23

Peptides

uncharacterized protein with ferredoxin-like fold: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

uncharacterized protein with ferredoxin-like fold