SMTL ID : 3fh9.1

Crystal structure determination of indian flying fox (Pteropus giganteus) at 1.62 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 17 residues within 4Å: Chain A: Y.42, F.43, H.45, F.46, H.58, K.61, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136 Ligands: OXY.2 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:F.43, A:A.65, A:L.83, A:L.86, A:L.91, A:V.93, A:N.97, A:L.101, A:L.136 Water bridges: A:H.45, A:H.45 Salt bridges: A:H.45, A:K.61 Metal complexes: A:H.87 HEM.3: 15 residues within 4Å: Chain B: F.41, F.42, H.63, S.70, F.71, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141 Ligands: OXY.4 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:F.41, B:F.42, B:F.42, B:F.71, B:L.88, B:L.91, B:L.96, B:V.98, B:N.102, B:F.103, B:L.141 Salt bridges: B:H.63 pi-Cation interactions: B:H.92 Metal complexes: B:H.92 HEM.5: 17 residues within 4Å: Chain C: Y.42, F.43, H.45, F.46, H.58, K.61, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136 Ligands: OXY.6 13 PLIP interactions: 13 interactions with chain C, Hydrophobic interactions: C:F.43, C:A.65, C:L.83, C:L.86, C:L.91, C:V.93, C:N.97, C:L.101, C:L.136 Water bridges: C:H.45 Salt bridges: C:H.45, C:K.61 Metal complexes: C:H.87 HEM.7: 15 residues within 4Å: Chain D: F.41, F.42, H.63, S.70, F.71, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141 Ligands: OXY.8 15 PLIP interactions: 15 interactions with chain D, Hydrophobic interactions: D:F.41, D:F.42, D:F.42, D:F.71, D:L.88, D:L.91, D:L.96, D:V.98, D:N.102, D:F.103, D:L.141 Water bridges: D:H.63 Salt bridges: D:H.63 pi-Cation interactions: D:H.92 Metal complexes: D:H.92

4 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.2: 4 residues within 4Å: Chain A: F.43, H.58, V.62 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.58 OXY.4: 4 residues within 4Å: Chain B: F.42, H.63, V.67 Ligands: HEM.3 No protein-ligand interaction detected (PLIP) OXY.6: 4 residues within 4Å: Chain C: F.43, H.58, V.62 Ligands: HEM.5 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.58 OXY.8: 4 residues within 4Å: Chain D: F.42, H.63, V.67 Ligands: HEM.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sathya Moorthy, Pon. et al., Crystal structure determination of indian flying fox (Pteropus giganteus) at 1.62 A resolution. To be Published

Release Date

2009-02-10

Peptides

Hemoglobin alpha chain: AC
Hemoglobin beta chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Hemoglobin alpha chain

Hemoglobin beta chain