SMTL ID : 3fha.2 (1 other biounit)

Structure of endo-beta-N-acetylglucosaminidase A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: F.76, T.310, M.311, E.312 Chain B: F.76, T.310, M.311, E.312 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:M.311, B:E.312, B:E.312, A:M.311

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: A.366, E.377 Chain B: E.309 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:E.309, A:A.366, A:E.377, H2O.25, H2O.40 CA.4: 3 residues within 4Å: Chain A: E.309 Chain B: A.366, E.377 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:A.366, B:E.377, B:E.377, A:E.309, H2O.31

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, J. et al., Structural basis and catalytic mechanism for the dual functional endo-beta-N-acetylglucosaminidase A. Plos One (2009)

Release Date

2009-04-28

Peptides

Endo-beta-N-acetylglucosaminidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Endo-beta-N-acetylglucosaminidase

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