SMTL ID : 3fhe.1

Leukotriene A4 Hydrolase complexed with inhibitor N-[3-(4-benzylphenoxy)propyl]-N-methyl-beta-alanine.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.296, H.300, E.319, Y.384 Ligands: 28P.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.296, A:H.300, A:E.319, A:E.319

3 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.2: 2 residues within 4Å: Chain A: D.482 Ligands: ACT.4 5 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.482, H2O.1, H2O.2, H2O.12, ACT.4 YB.3: 1 residues within 4Å: Chain A: D.176 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.176, H2O.14, H2O.15 YB.5: 1 residues within 4Å: Chain A: D.427 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.427, H2O.15, H2O.17

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: K.480, D.482 Ligands: YB.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.480 Water bridges: A:K.480, A:K.480, A:D.482

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.6: 8 residues within 4Å: Chain A: G.345, G.348, E.349, N.352, E.502, A.505, Q.506, Q.509 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.349, A:N.352 Water bridges: A:R.538

1 x 28P: N-[3-(4-benzylphenoxy)propyl]-N-methyl-beta-alanine(Non-covalent)

28P.7: 21 residues within 4Å: Chain A: Q.135, Q.137, A.138, Y.268, G.270, M.271, E.272, H.296, E.297, H.300, W.312, F.315, E.319, V.368, L.370, P.375, A.378, Y.379, P.383, Y.384 Ligands: ZN.1 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Q.137, A:A.138, A:Y.268, A:W.312, A:F.315, A:F.315, A:V.368, A:V.368, A:L.370, A:P.375, A:A.378, A:Y.379, A:Y.379, A:P.383 Hydrogen bonds: A:E.297, A:Y.384 Salt bridges: A:H.296, A:H.300 pi-Cation interactions: A:Y.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandanayaka, V. et al., Discovery of 4-[(2S)-2-{[4-(4-chlorophenoxy)phenoxy]methyl}-1-pyrrolidinyl]butanoic acid (DG-051) as a novel leukotriene A4 hydrolase inhibitor of leukotriene B4 biosynthesis. J.Med.Chem. (2010)

Release Date

2010-01-05

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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