SMTL ID : 3fht.1 (1 other biounit)

Crystal structure of human Dbp5 in complex with AMPPNP and RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.78, D.175, E.176 Ligands: ANP.3 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: Q.70, T.209, F.210, E.211, R.232, E.235, E.354, H.391, F.392 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.70, A:F.210, A:F.210, A:E.354 Water bridges: A:Q.70, A:D.212, A:R.232, A:E.235

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.3: 22 residues within 4Å: Chain A: F.27, F.45, R.47, P.48, S.49, Q.52, Q.72, S.73, G.74, T.75, G.76, K.77, T.78, E.176, A.208, G.329, D.331, E.333, R.362, R.365, F.366 Ligands: MG.1 34 PLIP interactions: 34 interactions with chain A Hydrogen bonds: A:S.49, A:Q.52, A:Q.52, A:G.74, A:T.75, A:G.76, A:K.77, A:K.77, A:K.77, A:K.77, A:T.78, A:T.78, A:T.78, A:G.329, A:D.331, A:E.333, A:R.362, A:R.362, A:R.365, A:R.365 Water bridges: A:N.46, A:N.46, A:K.77, A:A.79, A:Q.110, A:Q.110, A:E.176, A:E.176, A:A.208 Salt bridges: A:R.365 pi-Stacking: A:F.45, A:F.45, A:F.366, A:F.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

von Moeller, H. et al., The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner. Nat.Struct.Mol.Biol. (2009)

Release Date

2009-02-17

Peptides

ATP-dependent RNA helicase DDX19B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATP-dependent RNA helicase DDX19B

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