SMTL ID : 3fid.1 (1 other biounit)

LpxR from Salmonella typhimurium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: S.1, D.44, F.296 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.1, A:D.44 ZN.2: 4 residues within 4Å: Chain A: S.1, Y.41, H.43 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:S.1, A:Y.41, A:H.43 ZN.3: 3 residues within 4Å: Chain A: H.54, H.84, D.104 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.54, A:H.84, A:D.104, H2O.2 ZN.4: 2 residues within 4Å: Chain A: H.25, D.29 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.25, A:D.29, A:D.29 ZN.5: 4 residues within 4Å: Chain A: N.9, D.10, T.34 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.10, A:T.34, A:T.34

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: Y.60, R.77, F.176, L.201, R.226, N.231, T.233, E.278 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.77, A:R.77, A:R.226, A:N.231, A:T.233, A:T.233, A:E.278 Water bridges: A:Y.285 GOL.7: 5 residues within 4Å: Chain A: N.9, D.10, T.34, K.67 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.9, A:K.67, A:K.67 Water bridges: A:Q.118

4 x CXE: PENTAETHYLENE GLYCOL MONODECYL ETHER(Non-covalent)

CXE.8: 7 residues within 4Å: Chain A: I.14, F.15, S.18, V.257, G.258, L.270 Ligands: CXE.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.15, A:V.257, A:L.270 CXE.9: 7 residues within 4Å: Chain A: S.18, V.185, L.187, V.219, F.220, A.221 Ligands: CXE.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.187, A:A.221 CXE.10: 8 residues within 4Å: Chain A: L.22, Y.23, A.183, A.221, G.222, V.223, Y.255, V.257 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.223, A:Y.255, A:V.257 CXE.11: 12 residues within 4Å: Chain A: W.96, L.97, V.149, L.151, P.166, E.167, V.168, Y.181, G.182, V.223, R.225, Y.255 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.96, A:L.97, A:V.149, A:L.151, A:L.151 Hydrogen bonds: A:Y.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rutten, L. et al., Active-site architecture and catalytic mechanism of the lipid A deacylase LpxR of Salmonella typhimurium. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-02-10

Peptides

Putative outer membrane protein (LpxR): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Putative outer membrane protein (LpxR)

Related Entries With Identical Sequence