SMTL ID : 3fir.1

Crystal structure of Glycosylated K135E PEB3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x B6D- NGZ: 2-acetamido-2-deoxy-alpha-L-glucopyranose-(1-3)-2,4-bisacetamido-2,4,6-trideoxy-beta-D-glucopyranose(Post Translational Modification)

B6D-NGZ.1: 2 residues within 4Å: Chain A: N.90, S.92 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.92 B6D-NGZ.2: 1 residues within 4Å: Chain B: N.90 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.90

2 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 12 residues within 4Å: Chain A: P.27, G.28, G.54, P.55, N.137, T.138, S.139, P.169, N.170, S.171, G.172, S.173 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.27 Hydrogen bonds: A:G.28, A:T.138, A:T.138, A:S.139, A:S.173 Water bridges: A:Q.56, A:S.77, A:P.169, A:N.170, A:N.170 FLC.4: 12 residues within 4Å: Chain B: P.27, G.28, G.54, P.55, N.137, T.138, S.139, P.169, N.170, S.171, G.172, S.173 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:P.27 Hydrogen bonds: B:G.28, B:T.138, B:S.139, B:S.173 Water bridges: B:G.28, B:Q.56, B:Q.56, B:S.77, B:S.136, B:N.137, B:N.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Min, T. et al., Specificity of Campylobacter jejuni adhesin PEB3 for phosphates and structural differences among its ligand complexes. Biochemistry (2009)

Release Date

2009-03-10

Peptides

Major antigenic peptide PEB3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major antigenic peptide PEB3