SMTL ID : 3fjt.1

Crystal structure of a human Fc fragment engineered for extended serum half-life

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 15 residues within 4Å: Chain A: F.6, F.8, K.11, T.25, V.27, V.29, D.30, Q.60, Y.61, N.62, T.64, R.66, K.99 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.66, A:K.11, A:K.11 NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2: 12 residues within 4Å: Chain B: F.6, F.8, K.11, T.25, V.29, D.30, Q.60, N.62, R.66, K.99 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.66, B:K.11, B:K.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oganesyan, V. et al., Structural characterization of a human Fc fragment engineered for extended serum half-life. Mol.Immunol. (2009)

Release Date

2009-03-24

Peptides

Ig gamma-1 chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-1 chain C region

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