SMTL ID : 3fl7.1 (1 other biounit)

Crystal structure of the human ephrin A2 ectodomain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: D.153, E.171 Chain B: D.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.171 NA.6: 3 residues within 4Å: Chain A: D.148 Chain B: D.153, E.171 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.171

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: Q.61 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: K.473, R.491 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.98, S.174, V.175, G.176 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: Q.61 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: K.473, R.491 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: R.98, S.174, V.175, G.176 Ligand excluded by PLIP

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: N.412, T.414, S.436 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.414, A:T.414, A:S.436 NAG.10: 3 residues within 4Å: Chain B: N.412, T.414, S.436 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.414, B:T.414, B:S.436

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Himanen, J.P. et al., Architecture of Eph receptor clusters. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2009-01-27

Peptides

Ephrin receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ephrin receptor

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