SMTL ID : 3flc.1

Crystal structure of the His-tagged H232R mutant of glycerol kinase from Enterococcus casseliflavus with glycerol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: T.26, Q.95, R.96, E.97, W.116, Y.148, D.258, Q.259, F.283 Ligands: SO4.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.26, A:R.96, A:R.96, A:R.96, A:E.97, A:Y.148, A:Q.259 GOL.3: 9 residues within 4Å: Chain B: Q.95, R.96, E.97, W.116, Y.148, D.258, Q.259, F.283 Ligands: SO4.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.96, B:R.96, B:R.96, B:E.97, B:Q.259

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: G.25, T.26, T.27, G.279, T.280 Ligands: GOL.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.26, A:T.27, A:T.27, A:T.280, A:T.280 Water bridges: A:D.23, A:D.23, A:D.258, A:Q.259, A:G.281 SO4.4: 6 residues within 4Å: Chain B: G.25, T.26, T.27, G.279, T.280 Ligands: GOL.3 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.26, B:T.26, B:T.27, B:T.280, B:T.280, B:T.280 Water bridges: B:D.258, B:Q.259, B:G.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yeh, J.I. et al., Structural Characterizations of Glycerol Kinase: Unraveling Phosphorylation-Induced Long-Range Activation. Biochemistry (2008)

Release Date

2009-01-20

Peptides

Glycerol kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
X

Glycerol kinase