- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.11 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.48, G.60, D.62, S.64
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.48, A:D.62, A:S.64, H2O.1, H2O.5
CA.3: 5 residues within 4Å:- Chain A: S.170, D.187, T.189, V.192, D.194
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.187, A:D.187, A:T.189, A:V.192, A:D.194
- 6 x ZN: ZINC ION(Non-covalent)
ZN.4: 3 residues within 4Å:- Chain A: D.30, E.36, E.37
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.30, A:D.30, A:E.37, A:E.37, H2O.4
ZN.5: 1 residues within 4Å:- Chain A: D.237
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.237, A:D.237, H2O.6
ZN.6: 4 residues within 4Å:- Chain A: E.140, D.143
- Ligands: CAC.12, CAC.13
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.140, A:D.143, A:D.143
ZN.8: 1 residues within 4Å:- Chain A: H.95
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.95, H2O.6
ZN.9: 4 residues within 4Å:- Chain A: H.136, E.140
- Ligands: CAC.12, CAC.13
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.136, H2O.5, H2O.10
ZN.10: 3 residues within 4Å:- Chain A: E.36, E.40, E.83
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.36, A:E.40, A:E.83, A:E.83, H2O.9
- 2 x FE: FE (III) ION(Non-covalent)
FE.7: 2 residues within 4Å:- Chain A: H.293, D.318
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.293, A:D.318, H2O.12
FE.11: 2 residues within 4Å:- Chain A: D.69, K.89
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.69, H2O.1, H2O.4, H2O.10
- 2 x CAC: CACODYLATE ION(Non-covalent)
CAC.12: 8 residues within 4Å:- Chain A: H.136, V.138, E.140, D.143, S.147
- Ligands: ZN.6, ZN.9, CAC.13
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.147
- Water bridges: A:H.136
CAC.13: 7 residues within 4Å:- Chain A: H.136, E.140, F.142, D.143
- Ligands: ZN.6, ZN.9, CAC.12
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Piontek, K. et al., Structural and Site-directed Mutagenesis Study of Versatile Peroxidase Oxidizing both Mn(II) and Aromatic Substrates. To be Published
- Release Date
- 2009-12-22
- Peptides
- Versatile peroxidase VPL2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.11 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 6 x ZN: ZINC ION(Non-covalent)
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x CAC: CACODYLATE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Piontek, K. et al., Structural and Site-directed Mutagenesis Study of Versatile Peroxidase Oxidizing both Mn(II) and Aromatic Substrates. To be Published
- Release Date
- 2009-12-22
- Peptides
- Versatile peroxidase VPL2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A