- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.13 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.2: 5 residues within 4Å:- Chain A: D.48, G.60, D.62, S.64, I.65
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.48, A:D.62, A:S.64, H2O.6, H2O.7
CA.3: 7 residues within 4Å:- Chain A: S.170, D.187, T.189, P.190, V.192, D.194, Q.196
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.187, A:D.187, A:T.189, A:V.192, A:D.194
- 5 x ZN: ZINC ION(Non-covalent)
ZN.4: 2 residues within 4Å:- Chain A: D.30, E.37
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.30, A:D.30, A:E.37, A:E.37, H2O.1
ZN.5: 4 residues within 4Å:- Chain A: V.145, D.237, P.238, Q.239
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.237, A:D.237, H2O.2, H2O.11, H2O.11
ZN.7: 3 residues within 4Å:- Chain A: I.20, H.95, N.96
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:H.95, H2O.2, H2O.5, H2O.5, H2O.5
ZN.8: 5 residues within 4Å:- Chain A: E.36, E.40, E.83
- Ligands: ZN.9, FE.10
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.36, A:E.40, A:E.83, A:E.83, H2O.7
ZN.9: 5 residues within 4Å:- Chain A: E.36, E.37, E.40, E.83
- Ligands: ZN.8
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.36, A:E.40, A:E.40, A:E.83, H2O.5
- 5 x FE: FE (III) ION(Non-covalent)(Non-functional Binders)
FE.6: 3 residues within 4Å:- Chain A: H.293, P.295, D.318
6 PLIP interactions:2 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:H.293, A:D.318, H2O.4, H2O.5, H2O.5, H2O.13
FE.10: 3 residues within 4Å:- Chain A: E.83, D.175
- Ligands: ZN.8
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.175, H2O.5, H2O.5, H2O.5, H2O.14
FE.11: 3 residues within 4Å:- Chain A: D.69, T.70, K.89
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.69, H2O.13, H2O.14, H2O.17, H2O.21
FE.12: 1 residues within 4Å:- Ligands: FE.13
No protein-ligand interaction detected (PLIP)FE.13: 2 residues within 4Å:- Chain A: D.128
- Ligands: FE.12
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.128, H2O.9, H2O.20
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.14: 7 residues within 4Å:- Chain A: H.136, L.137, V.138, P.139, E.140, D.143, R.151
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:V.138
- Water bridges: A:D.135, A:H.136, A:H.136, A:E.140, A:E.140
GOL.15: 10 residues within 4Å:- Chain A: R.43, H.47, P.76, A.77, A.79, E.140, P.141, K.176, V.177
- Ligands: HEM.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.43, A:A.79, A:A.79, A:E.140
- Water bridges: A:R.43, A:Q.142
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Piontek, K. et al., Structural and Site-directed Mutagenesis Study of Versatile Peroxidase Oxidizing both Mn(II) and Aromatic Substrates. To be Published
- Release Date
- 2009-12-22
- Peptides
- Versatile peroxidase VPL2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.13 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 5 x ZN: ZINC ION(Non-covalent)
- 5 x FE: FE (III) ION(Non-covalent)(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Piontek, K. et al., Structural and Site-directed Mutagenesis Study of Versatile Peroxidase Oxidizing both Mn(II) and Aromatic Substrates. To be Published
- Release Date
- 2009-12-22
- Peptides
- Versatile peroxidase VPL2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A