SMTL ID : 3fmb.1

Crystal structure of dimeric protein of unknown function and ferredoxin-like fold (YP_212648.1) from Bacteroides fragilis NCTC 9343 at 1.85 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: H.23, V.25, F.27, Y.91, H.97, R.111 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.91 Water bridges: A:H.23, A:H.97, A:H.97 Salt bridges: A:H.23, A:H.97, A:R.111 SO4.3: 6 residues within 4Å: Chain B: H.23, V.25, F.27, Y.91, H.97, R.111 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:H.23, B:H.97, B:R.111

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: N.67, N.69, P.70, E.72, T.73, W.74, N.75 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.67, A:P.70, A:W.74, A:N.75 EDO.4: 5 residues within 4Å: Chain A: K.89, A.92 Chain B: N.69, G.71, E.72 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:K.89, B:N.69, B:E.72 Water bridges: A:K.89, A:K.89, B:N.69, B:G.71 EDO.5: 5 residues within 4Å: Chain B: N.67, M.68, N.69, P.70 Ligands: EDO.7 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Chain B: N.84, D.87 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.84 EDO.7: 4 residues within 4Å: Chain B: V.35, K.38, L.39 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of dimeric protein of unknown function and ferredoxin-like fold (YP_212648.1) from Bacteroides fragilis NCTC 9343 at 1.85 A resolution. To be published

Release Date

2009-01-27

Peptides

Dimeric protein of unknown function and ferredoxin-like fold: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dimeric protein of unknown function and ferredoxin-like fold