SMTL ID : 3fmx.2 (1 other biounit)

Crystal structure of Tartrate dehydrogenase from Pseudomonas putida complexed with NADH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 29 residues within 4Å: Chain A: I.16, F.75, A.77, V.78, G.79, W.80, P.81, D.86, L.94, R.98, I.262, G.263, E.281, V.283, H.284, G.285, S.286, A.287, P.288, D.289, I.290, A.296, N.297, D.342 Chain B: N.194, H.223, I.226, R.230 Ligands: NH4.2 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:V.78, A:G.79, A:R.98, A:E.281, A:H.284, A:G.285, A:G.285, A:S.286, A:A.287, A:D.289, A:N.297, B:N.194, B:H.223 Water bridges: B:R.230 NAI.3: 29 residues within 4Å: Chain A: N.194, H.223, I.226, R.230 Chain B: I.16, F.75, A.77, V.78, G.79, W.80, P.81, D.86, L.94, R.98, I.262, G.263, E.281, V.283, H.284, G.285, S.286, A.287, P.288, D.289, I.290, A.296, N.297, D.342 Ligands: NH4.4 14 PLIP interactions: 3 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:N.194, A:H.223, B:V.78, B:G.79, B:R.98, B:E.281, B:H.284, B:G.285, B:G.285, B:S.286, B:A.287, B:D.289, B:N.297 Water bridges: A:R.230

2 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.2: 5 residues within 4Å: Chain A: G.76, E.281, P.282, H.284 Ligands: NAI.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.76 NH4.4: 5 residues within 4Å: Chain B: G.76, E.281, P.282, H.284 Ligands: NAI.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.281, B:H.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malik, R. et al., Structural Characterization of Tartrate Dehydrogenase: a versatile enzyme catalyzing multiple reactions. To be Published

Release Date

2010-01-12

Peptides

Tartrate dehydrogenase/decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

Tartrate dehydrogenase/decarboxylase

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