SMTL ID : 3fn4.1

Apo-form of NAD-dependent formate dehydrogenase from bacterium Moraxella sp.C-1 in closed conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: P.97, F.98, I.122, V.150, T.282, A.283, R.284, H.332, S.334, G.335 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.283, A:R.284, A:R.284, A:S.334 Water bridges: A:S.334, A:S.334 GOL.3: 10 residues within 4Å: Chain B: P.97, F.98, I.122, V.150, T.282, A.283, R.284, H.332, S.334, G.335 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.283, B:R.284, B:R.284, B:S.334 Water bridges: B:S.334, B:S.334

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: G.200, R.201, I.202 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.201, A:I.202 Water bridges: A:G.200, A:G.200 Salt bridges: A:R.201 SO4.4: 3 residues within 4Å: Chain B: G.200, R.201, I.202 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.201, B:I.202 Water bridges: B:G.200, B:G.200 Salt bridges: B:R.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shabalin, I.G. et al., Structures of the apo and holo forms of formate dehydrogenase from the bacterium Moraxella sp. C-1: towards understanding the mechanism of the closure of the interdomain cleft. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-12-01

Peptides

NAD-dependent formate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NAD-dependent formate dehydrogenase