SMTL ID : 3fnb.1

Crystal structure of acylaminoacyl peptidase SMU_737 from Streptococcus mutans UA159

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: R.369, K.370, F.371, S.372, S.375 Chain B: Y.71 No protein-ligand interaction detected (PLIP) MG.5: 5 residues within 4Å: Chain A: Y.71 Chain B: R.369, K.370, S.372, S.375 No protein-ligand interaction detected (PLIP)

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 5 residues within 4Å: Chain A: F.27, D.169, M.178, H.380, C.381 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.169, A:D.169, A:S.236 Water bridges: A:D.169 BME.6: 4 residues within 4Å: Chain B: M.178, S.236, H.380, C.381 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.236, B:H.380 Water bridges: B:D.169, B:S.236

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 6 residues within 4Å: Chain A: E.209, F.241, F.268, Y.304, F.308, V.320 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.237 PGE.7: 6 residues within 4Å: Chain B: F.208, E.209, F.241, F.268, Y.304 Ligands: EDO.8 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: Y.48, I.49, S.51, G.52, R.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.49, A:G.52 EDO.8: 5 residues within 4Å: Chain B: S.236, G.237, L.348, H.380 Ligands: PGE.7 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal structure of acylaminoacyl-peptidase SMU_737 from Streptococcus mutans UA159. To be Published

Release Date

2009-01-06

Peptides

Acylaminoacyl peptidase SMU_737: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acylaminoacyl peptidase SMU_737