SMTL ID : 3fo3.1

Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium dithionite (sulfite complex)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-hexamer

Ligands

48 x HEC: HEME C(Covalent)

HEC.1: 26 residues within 4Å: Chain A: H.113, A.114, E.115, P.116, D.125, H.126, V.129, R.131, A.132, A.179, A.180, C.184, C.187, K.188, R.242, C.299, H.300, V.301, Y.303, C.305, F.327, H.361, A.484, N.486 Ligands: HEC.3, SO3.9 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:P.116, A:V.129, A:A.132, A:V.301, A:Y.303, A:Y.303, A:Y.303, A:F.327 Hydrogen bonds: A:A.114, A:A.484, A:N.486 Water bridges: A:K.90, A:K.90, A:H.113, A:R.131, A:H.361 Salt bridges: A:K.90, A:H.113, A:R.131, A:H.361 pi-Cation interactions: A:H.126 HEC.2: 21 residues within 4Å: Chain A: L.63, C.66, H.70, Q.73, F.74, F.77, L.225, N.226, C.227, M.229, C.230, H.231, A.290, S.292, M.295, M.384, Y.395, T.396, H.398 Ligands: HEC.3, HEC.7 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:H.70, A:Q.73, A:L.225, A:A.290, A:T.396 Hydrogen bonds: A:Q.73, A:T.396, A:T.396 Water bridges: A:K.386, A:K.386, A:K.386 Salt bridges: A:K.386, A:K.386 Metal complexes: A:H.231, A:H.398 HEC.3: 28 residues within 4Å: Chain A: R.81, S.84, P.116, R.117, S.118, H.119, F.121, M.122, D.125, C.187, K.188, L.225, M.229, S.292, M.295, C.296, Q.298, C.299, H.300, C.379, H.383, M.384, Q.400, R.401 Ligands: HEC.1, HEC.2, HEC.4, CA.11 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:P.116, A:H.383 Hydrogen bonds: A:P.116, A:R.117, A:F.121, A:D.125 Water bridges: A:R.81, A:R.81, A:R.81, A:R.81 Metal complexes: A:H.119, A:H.300 HEC.4: 25 residues within 4Å: Chain A: R.96, N.293, C.296, H.300, E.363, A.364, F.367, H.372, V.377, A.378, C.379, C.382, H.383, T.402, P.403, R.404, I.427, K.431, N.486, S.487, F.490, H.491 Ligands: HEC.3, HEC.5, CA.11 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:H.300, A:E.363, A:E.363, A:F.367, A:V.377, A:P.403, A:I.427, A:N.486, A:F.490 Hydrogen bonds: A:R.96, A:T.402 Water bridges: A:R.81, A:R.81, A:R.96, A:R.404, A:R.404, A:N.486, A:N.486 Salt bridges: A:R.404, A:K.431 Metal complexes: A:H.383, A:H.491 HEC.5: 21 residues within 4Å: Chain A: V.371, H.372, N.375, V.377, D.381, C.382, P.403, A.410, C.411, C.414, H.415, W.418, A.423, I.427, F.490, P.493 Chain C: N.141, W.142, Q.143 Ligands: HEC.4, PG4.21 16 PLIP interactions: 4 interactions with chain C, 12 interactions with chain A, Hydrophobic interactions: C:W.142, C:Q.143, A:V.371, A:N.375, A:V.377, A:P.403, A:W.418, A:I.427, A:F.490 Hydrogen bonds: C:W.142, C:Q.143 Water bridges: A:N.375, A:N.375, A:N.375 Metal complexes: A:H.372, A:H.415 HEC.6: 25 residues within 4Å: Chain A: A.11, C.14, F.15, H.18, I.21, H.25, V.33, N.34, C.35, H.37, C.38, H.39, T.59, I.193, L.194, F.228, P.233, H.234, R.239, F.274, R.276, R.282 Ligands: HEC.7, HEC.8, SO4.12 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:A.11, A:F.15, A:I.21, A:I.21, A:V.33, A:T.59, A:I.193, A:L.194, A:F.228, A:P.233, A:F.274 Water bridges: A:H.234 Salt bridges: A:R.239, A:R.276, A:R.282, A:R.282 Metal complexes: A:H.39, A:H.234 HEC.7: 20 residues within 4Å: Chain A: K.29, H.30, V.33, H.37, A.65, C.66, T.68, C.69, H.70, C.227, F.228, H.231, P.233, A.236, G.237 Chain B: H.37, C.69 Ligands: HEC.2, HEC.6, HEC.34 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:K.29, A:V.33, A:A.236 Salt bridges: A:K.29, A:K.29 Metal complexes: A:H.30, A:H.70 HEC.8: 23 residues within 4Å: Chain A: V.9, Q.13, C.14, C.17, H.18, C.35, H.39, A.41, H.44, V.45, A.48, S.49, S.50, R.52, M.53, R.56, P.57, T.59, L.194, Q.275, R.276, G.277 Ligands: HEC.6 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:V.9, A:A.41, A:V.45, A:M.53, A:P.57 Water bridges: A:H.18, A:R.56, A:Q.275, A:R.276, A:R.276, A:R.278 Salt bridges: A:R.56, A:R.276 Metal complexes: A:H.18, A:H.44 HEC.28: 27 residues within 4Å: Chain B: H.113, A.114, E.115, P.116, D.125, H.126, V.129, R.131, A.132, A.179, A.180, C.184, C.187, K.188, R.242, C.299, H.300, V.301, Y.303, C.305, F.327, H.361, A.484, N.486 Ligands: HEC.30, SO3.36, PG4.57 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:P.116, B:V.129, B:A.132, B:V.301, B:Y.303, B:Y.303, B:Y.303, B:F.327 Hydrogen bonds: B:A.114, B:A.484, B:N.486 Water bridges: B:H.113, B:R.131, B:H.361 Salt bridges: B:K.90, B:H.113, B:R.131, B:H.361 HEC.29: 21 residues within 4Å: Chain B: L.63, C.66, H.70, Q.73, F.74, F.77, L.225, N.226, C.227, M.229, C.230, H.231, A.290, S.292, M.295, M.384, Y.395, T.396, H.398 Ligands: HEC.30, HEC.34 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:H.70, B:Q.73, B:L.225, B:A.290, B:T.396 Hydrogen bonds: B:Q.73, B:T.396 Water bridges: B:K.386, B:K.386, B:K.386, B:K.386 Salt bridges: B:K.386, B:K.386 Metal complexes: B:H.231, B:H.398 HEC.30: 28 residues within 4Å: Chain B: R.81, S.84, P.116, R.117, S.118, H.119, F.121, M.122, D.125, C.187, K.188, L.225, M.229, S.292, M.295, C.296, Q.298, C.299, H.300, C.379, H.383, M.384, Q.400, R.401 Ligands: HEC.28, HEC.29, HEC.31, CA.38 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:P.116, B:H.383 Hydrogen bonds: B:R.117, B:S.118, B:F.121 Water bridges: B:R.81, B:R.81, B:R.81, B:S.84, B:Q.400 Metal complexes: B:H.119, B:H.300 HEC.31: 25 residues within 4Å: Chain B: R.96, N.293, C.296, H.300, E.363, A.364, F.367, H.372, V.377, A.378, C.379, C.382, H.383, T.402, P.403, R.404, I.427, K.431, N.486, S.487, F.490, H.491 Ligands: HEC.30, HEC.32, CA.38 23 PLIP interactions: 23 interactions with chain B, Hydrophobic interactions: B:H.300, B:E.363, B:E.363, B:F.367, B:V.377, B:P.403, B:I.427, B:N.486, B:F.490 Hydrogen bonds: B:R.96, B:T.402 Water bridges: B:R.81, B:R.81, B:R.96, B:R.404, B:R.404, B:K.431, B:N.486, B:N.486 Salt bridges: B:R.404, B:K.431 Metal complexes: B:H.383, B:H.491 HEC.32: 21 residues within 4Å: Chain B: V.371, H.372, N.375, V.377, D.381, C.382, P.403, A.410, C.411, C.414, H.415, W.418, A.423, I.427, F.490, P.493 Chain F: N.141, W.142, Q.143 Ligands: HEC.31, PG4.50 14 PLIP interactions: 10 interactions with chain B, 4 interactions with chain F, Hydrophobic interactions: B:V.371, B:N.375, B:P.403, B:W.418, B:I.427, B:F.490, F:W.142, F:Q.143 Water bridges: B:N.375, B:N.375 Metal complexes: B:H.372, B:H.415 Hydrogen bonds: F:W.142, F:Q.143 HEC.33: 26 residues within 4Å: Chain B: A.11, C.14, F.15, H.18, I.21, H.25, V.33, N.34, C.35, H.37, C.38, H.39, T.59, M.61, I.193, L.194, F.228, P.233, H.234, R.239, F.274, R.276, R.282 Ligands: HEC.34, HEC.35, SO3.39 20 PLIP interactions: 20 interactions with chain B, Hydrophobic interactions: B:A.11, B:F.15, B:I.21, B:I.21, B:V.33, B:T.59, B:I.193, B:L.194, B:F.228, B:P.233, B:F.274 Water bridges: B:R.282 Salt bridges: B:R.239, B:R.276, B:R.282, B:R.282 pi-Stacking: B:H.39, B:H.234 Metal complexes: B:H.39, B:H.234 HEC.34: 20 residues within 4Å: Chain A: H.37, C.69 Chain B: K.29, H.30, V.33, H.37, A.65, C.66, T.68, C.69, H.70, C.227, F.228, H.231, P.233, A.236, G.237 Ligands: HEC.7, HEC.29, HEC.33 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:V.33 Water bridges: B:K.393 Salt bridges: B:K.29, B:K.29 Metal complexes: B:H.30, B:H.70 HEC.35: 25 residues within 4Å: Chain B: Q.13, C.14, C.17, H.18, C.35, H.39, A.41, H.44, V.45, A.48, S.49, S.50, R.51, R.52, M.53, R.56, P.57, T.59, L.194, Q.275, R.276, G.277 Ligands: HEC.33, SO3.39, PG4.49 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:A.41, B:V.45, B:M.53, B:P.57 Water bridges: B:H.18, B:Q.275, B:R.276, B:R.276, B:R.278 Salt bridges: B:R.56, B:R.276 Metal complexes: B:H.18, B:H.44 HEC.60: 26 residues within 4Å: Chain C: H.113, A.114, E.115, P.116, D.125, H.126, V.129, R.131, A.132, A.179, A.180, C.184, C.187, K.188, R.242, C.299, H.300, V.301, Y.303, C.305, F.327, H.361, A.484, N.486 Ligands: HEC.62, SO3.68 19 PLIP interactions: 19 interactions with chain C, Hydrophobic interactions: C:P.116, C:V.129, C:A.132, C:V.301, C:Y.303, C:Y.303, C:Y.303, C:F.327 Hydrogen bonds: C:A.114, C:A.484, C:N.486 Water bridges: C:H.113, C:R.131, C:H.361 Salt bridges: C:K.90, C:H.113, C:R.131, C:H.361 pi-Cation interactions: C:H.126 HEC.61: 21 residues within 4Å: Chain C: L.63, C.66, H.70, Q.73, F.74, F.77, L.225, N.226, C.227, M.229, C.230, H.231, A.290, S.292, M.295, M.384, Y.395, T.396, H.398 Ligands: HEC.62, HEC.66 14 PLIP interactions: 14 interactions with chain C, Hydrophobic interactions: C:H.70, C:Q.73, C:L.225, C:A.290, C:T.396 Hydrogen bonds: C:Q.73, C:T.396 Water bridges: C:K.386, C:K.386, C:K.386 Salt bridges: C:K.386, C:K.386 Metal complexes: C:H.231, C:H.398 HEC.62: 28 residues within 4Å: Chain C: R.81, S.84, P.116, R.117, S.118, H.119, F.121, M.122, D.125, C.187, K.188, L.225, M.229, S.292, M.295, C.296, Q.298, C.299, H.300, C.379, H.383, M.384, Q.400, R.401 Ligands: HEC.60, HEC.61, HEC.63, CA.70 11 PLIP interactions: 11 interactions with chain C, Hydrophobic interactions: C:P.116, C:H.383 Hydrogen bonds: C:P.116, C:R.117, C:F.121 Water bridges: C:R.81, C:R.81, C:R.81, C:R.81 Metal complexes: C:H.119, C:H.300 HEC.63: 25 residues within 4Å: Chain C: R.96, N.293, C.296, H.300, E.363, A.364, F.367, H.372, V.377, A.378, C.379, C.382, H.383, T.402, P.403, R.404, I.427, K.431, N.486, S.487, F.490, H.491 Ligands: HEC.62, HEC.64, CA.70 22 PLIP interactions: 22 interactions with chain C, Hydrophobic interactions: C:H.300, C:E.363, C:E.363, C:F.367, C:V.377, C:P.403, C:I.427, C:N.486, C:F.490 Hydrogen bonds: C:R.96, C:T.402 Water bridges: C:R.81, C:R.81, C:R.96, C:R.404, C:R.404, C:N.486, C:N.486 Salt bridges: C:R.404, C:K.431 Metal complexes: C:H.383, C:H.491 HEC.64: 21 residues within 4Å: Chain C: V.371, H.372, N.375, V.377, D.381, C.382, P.403, A.410, C.411, C.414, H.415, W.418, A.423, I.427, F.490, P.493 Chain E: N.141, W.142, Q.143 Ligands: HEC.63, PG4.80 16 PLIP interactions: 12 interactions with chain C, 4 interactions with chain E, Hydrophobic interactions: C:V.371, C:N.375, C:V.377, C:P.403, C:W.418, C:I.427, C:F.490, E:W.142, E:Q.143 Water bridges: C:N.375, C:N.375, C:N.375 Metal complexes: C:H.372, C:H.415 Hydrogen bonds: E:W.142, E:Q.143 HEC.65: 25 residues within 4Å: Chain C: A.11, C.14, F.15, H.18, I.21, H.25, V.33, N.34, C.35, H.37, C.38, H.39, T.59, I.193, L.194, F.228, P.233, H.234, R.239, F.274, R.276, R.282 Ligands: HEC.66, HEC.67, SO4.71 18 PLIP interactions: 18 interactions with chain C, Hydrophobic interactions: C:A.11, C:F.15, C:I.21, C:I.21, C:V.33, C:T.59, C:I.193, C:L.194, C:F.228, C:P.233, C:F.274 Water bridges: C:H.234 Salt bridges: C:R.239, C:R.276, C:R.282, C:R.282 Metal complexes: C:H.39, C:H.234 HEC.66: 20 residues within 4Å: Chain C: K.29, H.30, V.33, H.37, A.65, C.66, T.68, C.69, H.70, C.227, F.228, H.231, P.233, A.236, G.237 Chain D: H.37, C.69 Ligands: HEC.61, HEC.65, HEC.93 8 PLIP interactions: 8 interactions with chain C, Hydrophobic interactions: C:K.29, C:V.33, C:A.236 Water bridges: C:K.393 Salt bridges: C:K.29, C:K.29 Metal complexes: C:H.30, C:H.70 HEC.67: 23 residues within 4Å: Chain C: V.9, Q.13, C.14, C.17, H.18, C.35, H.39, A.41, H.44, V.45, A.48, S.49, S.50, R.52, M.53, R.56, P.57, T.59, L.194, Q.275, R.276, G.277 Ligands: HEC.65 15 PLIP interactions: 15 interactions with chain C, Hydrophobic interactions: C:V.9, C:A.41, C:V.45, C:M.53, C:P.57 Water bridges: C:H.18, C:R.56, C:Q.275, C:R.276, C:R.276, C:R.278 Salt bridges: C:R.56, C:R.276 Metal complexes: C:H.18, C:H.44 HEC.87: 27 residues within 4Å: Chain D: H.113, A.114, E.115, P.116, D.125, H.126, V.129, R.131, A.132, A.179, A.180, C.184, C.187, K.188, R.242, C.299, H.300, V.301, Y.303, C.305, F.327, H.361, A.484, N.486 Ligands: HEC.89, SO3.95, PG4.116 20 PLIP interactions: 20 interactions with chain D, Hydrophobic interactions: D:P.116, D:V.129, D:A.132, D:V.301, D:Y.303, D:Y.303, D:Y.303, D:F.327 Hydrogen bonds: D:A.114, D:A.484, D:N.486 Water bridges: D:K.90, D:K.90, D:H.113, D:H.113, D:R.131 Salt bridges: D:K.90, D:H.113, D:R.131, D:H.361 HEC.88: 21 residues within 4Å: Chain D: L.63, C.66, H.70, Q.73, F.74, F.77, L.225, N.226, C.227, M.229, C.230, H.231, A.290, S.292, M.295, M.384, Y.395, T.396, H.398 Ligands: HEC.89, HEC.93 15 PLIP interactions: 15 interactions with chain D, Hydrophobic interactions: D:H.70, D:Q.73, D:L.225, D:A.290, D:T.396 Hydrogen bonds: D:Q.73, D:T.396 Water bridges: D:K.386, D:K.386, D:K.386, D:K.386 Salt bridges: D:K.386, D:K.386 Metal complexes: D:H.231, D:H.398 HEC.89: 28 residues within 4Å: Chain D: R.81, S.84, P.116, R.117, S.118, H.119, F.121, M.122, D.125, C.187, K.188, L.225, M.229, S.292, M.295, C.296, Q.298, C.299, H.300, C.379, H.383, M.384, Q.400, R.401 Ligands: HEC.87, HEC.88, HEC.90, CA.97 12 PLIP interactions: 12 interactions with chain D, Hydrophobic interactions: D:P.116, D:H.383 Hydrogen bonds: D:R.117, D:F.121, D:D.125 Water bridges: D:R.81, D:R.81, D:R.81, D:S.84, D:Q.400 Metal complexes: D:H.119, D:H.300 HEC.90: 25 residues within 4Å: Chain D: R.96, N.293, C.296, H.300, E.363, A.364, F.367, H.372, V.377, A.378, C.379, C.382, H.383, T.402, P.403, R.404, I.427, K.431, N.486, S.487, F.490, H.491 Ligands: HEC.89, HEC.91, CA.97 23 PLIP interactions: 23 interactions with chain D, Hydrophobic interactions: D:H.300, D:E.363, D:E.363, D:F.367, D:V.377, D:P.403, D:I.427, D:N.486, D:F.490 Hydrogen bonds: D:R.96, D:T.402, D:T.402 Water bridges: D:R.81, D:R.81, D:R.96, D:R.404, D:R.404, D:N.486, D:N.486 Salt bridges: D:R.404, D:K.431 Metal complexes: D:H.383, D:H.491 HEC.91: 21 residues within 4Å: Chain B: N.141, W.142, Q.143 Chain D: V.371, H.372, N.375, V.377, D.381, C.382, P.403, A.410, C.411, C.414, H.415, W.418, A.423, I.427, F.490, P.493 Ligands: HEC.90, PG4.109 14 PLIP interactions: 10 interactions with chain D, 4 interactions with chain B, Hydrophobic interactions: D:V.371, D:N.375, D:P.403, D:W.418, D:I.427, D:F.490, B:W.142, B:Q.143 Water bridges: D:N.375, D:N.375 Metal complexes: D:H.372, D:H.415 Hydrogen bonds: B:W.142, B:Q.143 HEC.92: 26 residues within 4Å: Chain D: A.11, C.14, F.15, H.18, I.21, H.25, V.33, N.34, C.35, H.37, C.38, H.39, T.59, M.61, I.193, L.194, F.228, P.233, H.234, R.239, F.274, R.276, R.282 Ligands: HEC.93, HEC.94, SO3.98 20 PLIP interactions: 20 interactions with chain D, Hydrophobic interactions: D:A.11, D:F.15, D:I.21, D:I.21, D:V.33, D:T.59, D:I.193, D:L.194, D:F.228, D:P.233, D:F.274 Water bridges: D:R.282 Salt bridges: D:R.239, D:R.276, D:R.282, D:R.282 pi-Stacking: D:H.39, D:H.234 Metal complexes: D:H.39, D:H.234 HEC.93: 20 residues within 4Å: Chain C: H.37, C.69 Chain D: K.29, H.30, V.33, H.37, A.65, C.66, T.68, C.69, H.70, C.227, F.228, H.231, P.233, A.236, G.237 Ligands: HEC.66, HEC.88, HEC.92 6 PLIP interactions: 6 interactions with chain D, Hydrophobic interactions: D:V.33 Water bridges: D:K.393 Salt bridges: D:K.29, D:K.29 Metal complexes: D:H.30, D:H.70 HEC.94: 25 residues within 4Å: Chain D: Q.13, C.14, C.17, H.18, C.35, H.39, A.41, H.44, V.45, A.48, S.49, S.50, R.51, R.52, M.53, R.56, P.57, T.59, L.194, Q.275, R.276, G.277 Ligands: HEC.92, SO3.98, PG4.108 13 PLIP interactions: 13 interactions with chain D, Hydrophobic interactions: D:A.41, D:V.45, D:M.53, D:P.57 Water bridges: D:H.18, D:Q.275, D:R.276, D:R.276, D:R.278 Salt bridges: D:R.56, D:R.276 Metal complexes: D:H.18, D:H.44 HEC.119: 26 residues within 4Å: Chain E: H.113, A.114, E.115, P.116, D.125, H.126, V.129, R.131, A.132, A.179, A.180, C.184, C.187, K.188, R.242, C.299, H.300, V.301, Y.303, C.305, F.327, H.361, A.484, N.486 Ligands: HEC.121, SO3.127 21 PLIP interactions: 21 interactions with chain E, Hydrophobic interactions: E:P.116, E:V.129, E:A.132, E:V.301, E:Y.303, E:Y.303, E:Y.303, E:F.327 Hydrogen bonds: E:A.114, E:A.484, E:N.486 Water bridges: E:K.90, E:K.90, E:H.113, E:R.131, E:H.361 Salt bridges: E:K.90, E:H.113, E:R.131, E:H.361 pi-Cation interactions: E:H.126 HEC.120: 21 residues within 4Å: Chain E: L.63, C.66, H.70, Q.73, F.74, F.77, L.225, N.226, C.227, M.229, C.230, H.231, A.290, S.292, M.295, M.384, Y.395, T.396, H.398 Ligands: HEC.121, HEC.125 15 PLIP interactions: 15 interactions with chain E, Hydrophobic interactions: E:H.70, E:Q.73, E:L.225, E:A.290, E:T.396 Hydrogen bonds: E:Q.73, E:T.396, E:T.396 Water bridges: E:K.386, E:K.386, E:K.386 Salt bridges: E:K.386, E:K.386 Metal complexes: E:H.231, E:H.398 HEC.121: 28 residues within 4Å: Chain E: R.81, S.84, P.116, R.117, S.118, H.119, F.121, M.122, D.125, C.187, K.188, L.225, M.229, S.292, M.295, C.296, Q.298, C.299, H.300, C.379, H.383, M.384, Q.400, R.401 Ligands: HEC.119, HEC.120, HEC.122, CA.129 13 PLIP interactions: 13 interactions with chain E, Hydrophobic interactions: E:P.116, E:H.383 Hydrogen bonds: E:S.84, E:P.116, E:R.117, E:S.118, E:F.121 Water bridges: E:R.81, E:R.81, E:R.81, E:R.81 Metal complexes: E:H.119, E:H.300 HEC.122: 25 residues within 4Å: Chain E: R.96, N.293, C.296, H.300, E.363, A.364, F.367, H.372, V.377, A.378, C.379, C.382, H.383, T.402, P.403, R.404, I.427, K.431, N.486, S.487, F.490, H.491 Ligands: HEC.121, HEC.123, CA.129 22 PLIP interactions: 22 interactions with chain E, Hydrophobic interactions: E:H.300, E:E.363, E:E.363, E:F.367, E:V.377, E:P.403, E:I.427, E:N.486, E:F.490 Hydrogen bonds: E:R.96, E:T.402 Water bridges: E:R.81, E:S.84, E:R.96, E:R.404, E:R.404, E:N.486, E:N.486 Salt bridges: E:R.404, E:K.431 Metal complexes: E:H.383, E:H.491 HEC.123: 21 residues within 4Å: Chain A: N.141, W.142, Q.143 Chain E: V.371, H.372, N.375, V.377, D.381, C.382, P.403, A.410, C.411, C.414, H.415, W.418, A.423, I.427, F.490, P.493 Ligands: HEC.122, PG4.139 16 PLIP interactions: 12 interactions with chain E, 4 interactions with chain A, Hydrophobic interactions: E:V.371, E:N.375, E:V.377, E:P.403, E:W.418, E:I.427, E:F.490, A:W.142, A:Q.143 Water bridges: E:N.375, E:N.375, E:N.375 Metal complexes: E:H.372, E:H.415 Hydrogen bonds: A:W.142, A:Q.143 HEC.124: 25 residues within 4Å: Chain E: A.11, C.14, F.15, H.18, I.21, H.25, V.33, N.34, C.35, H.37, C.38, H.39, T.59, I.193, L.194, F.228, P.233, H.234, R.239, F.274, R.276, R.282 Ligands: HEC.125, HEC.126, SO4.130 18 PLIP interactions: 18 interactions with chain E, Hydrophobic interactions: E:A.11, E:F.15, E:I.21, E:I.21, E:V.33, E:T.59, E:I.193, E:L.194, E:F.228, E:P.233, E:F.274 Water bridges: E:H.234 Salt bridges: E:R.239, E:R.276, E:R.282, E:R.282 Metal complexes: E:H.39, E:H.234 HEC.125: 20 residues within 4Å: Chain E: K.29, H.30, V.33, H.37, A.65, C.66, T.68, C.69, H.70, C.227, F.228, H.231, P.233, A.236, G.237 Chain F: H.37, C.69 Ligands: HEC.120, HEC.124, HEC.152 7 PLIP interactions: 7 interactions with chain E, Hydrophobic interactions: E:K.29, E:V.33, E:A.236 Salt bridges: E:K.29, E:K.29 Metal complexes: E:H.30, E:H.70 HEC.126: 23 residues within 4Å: Chain E: V.9, Q.13, C.14, C.17, H.18, C.35, H.39, A.41, H.44, V.45, A.48, S.49, S.50, R.52, M.53, R.56, P.57, T.59, L.194, Q.275, R.276, G.277 Ligands: HEC.124 15 PLIP interactions: 15 interactions with chain E, Hydrophobic interactions: E:V.9, E:A.41, E:V.45, E:M.53, E:P.57 Water bridges: E:H.18, E:R.56, E:Q.275, E:R.276, E:R.276, E:R.278 Salt bridges: E:R.56, E:R.276 Metal complexes: E:H.18, E:H.44 HEC.146: 27 residues within 4Å: Chain F: H.113, A.114, E.115, P.116, D.125, H.126, V.129, R.131, A.132, A.179, A.180, C.184, C.187, K.188, R.242, C.299, H.300, V.301, Y.303, C.305, F.327, H.361, A.484, N.486 Ligands: HEC.148, SO3.154, PG4.175 20 PLIP interactions: 20 interactions with chain F, Hydrophobic interactions: F:P.116, F:V.129, F:A.132, F:V.301, F:Y.303, F:Y.303, F:Y.303, F:F.327 Hydrogen bonds: F:A.114, F:A.484, F:N.486 Water bridges: F:K.90, F:K.90, F:H.113, F:H.113, F:R.131 Salt bridges: F:K.90, F:H.113, F:R.131, F:H.361 HEC.147: 21 residues within 4Å: Chain F: L.63, C.66, H.70, Q.73, F.74, F.77, L.225, N.226, C.227, M.229, C.230, H.231, A.290, S.292, M.295, M.384, Y.395, T.396, H.398 Ligands: HEC.148, HEC.152 15 PLIP interactions: 15 interactions with chain F, Hydrophobic interactions: F:H.70, F:Q.73, F:L.225, F:A.290, F:T.396 Hydrogen bonds: F:Q.73, F:T.396 Water bridges: F:K.386, F:K.386, F:K.386, F:K.386 Salt bridges: F:K.386, F:K.386 Metal complexes: F:H.231, F:H.398 HEC.148: 28 residues within 4Å: Chain F: R.81, S.84, P.116, R.117, S.118, H.119, F.121, M.122, D.125, C.187, K.188, L.225, M.229, S.292, M.295, C.296, Q.298, C.299, H.300, C.379, H.383, M.384, Q.400, R.401 Ligands: HEC.146, HEC.147, HEC.149, CA.156 13 PLIP interactions: 13 interactions with chain F, Hydrophobic interactions: F:P.116, F:H.383 Hydrogen bonds: F:S.84, F:R.117, F:F.121, F:D.125 Water bridges: F:R.81, F:R.81, F:R.81, F:R.81, F:Q.400 Metal complexes: F:H.119, F:H.300 HEC.149: 25 residues within 4Å: Chain F: R.96, N.293, C.296, H.300, E.363, A.364, F.367, H.372, V.377, A.378, C.379, C.382, H.383, T.402, P.403, R.404, I.427, K.431, N.486, S.487, F.490, H.491 Ligands: HEC.148, HEC.150, CA.156 23 PLIP interactions: 23 interactions with chain F, Hydrophobic interactions: F:H.300, F:E.363, F:E.363, F:F.367, F:V.377, F:P.403, F:I.427, F:N.486, F:F.490 Hydrogen bonds: F:R.96, F:T.402 Water bridges: F:R.81, F:S.84, F:R.96, F:R.404, F:R.404, F:K.431, F:N.486, F:N.486 Salt bridges: F:R.404, F:K.431 Metal complexes: F:H.383, F:H.491 HEC.150: 21 residues within 4Å: Chain D: N.141, W.142, Q.143 Chain F: V.371, H.372, N.375, V.377, D.381, C.382, P.403, A.410, C.411, C.414, H.415, W.418, A.423, I.427, F.490, P.493 Ligands: HEC.149, PG4.168 14 PLIP interactions: 10 interactions with chain F, 4 interactions with chain D, Hydrophobic interactions: F:V.371, F:N.375, F:P.403, F:W.418, F:I.427, F:F.490, D:W.142, D:Q.143 Water bridges: F:N.375, F:N.375 Metal complexes: F:H.372, F:H.415 Hydrogen bonds: D:W.142, D:Q.143 HEC.151: 26 residues within 4Å: Chain F: A.11, C.14, F.15, H.18, I.21, H.25, V.33, N.34, C.35, H.37, C.38, H.39, T.59, M.61, I.193, L.194, F.228, P.233, H.234, R.239, F.274, R.276, R.282 Ligands: HEC.152, HEC.153, SO3.157 20 PLIP interactions: 20 interactions with chain F, Hydrophobic interactions: F:A.11, F:F.15, F:I.21, F:I.21, F:V.33, F:T.59, F:I.193, F:L.194, F:F.228, F:P.233, F:F.274 Water bridges: F:R.282 Salt bridges: F:R.239, F:R.276, F:R.282, F:R.282 pi-Stacking: F:H.39, F:H.234 Metal complexes: F:H.39, F:H.234 HEC.152: 20 residues within 4Å: Chain E: H.37, C.69 Chain F: K.29, H.30, V.33, H.37, A.65, C.66, T.68, C.69, H.70, C.227, F.228, H.231, P.233, A.236, G.237 Ligands: HEC.125, HEC.147, HEC.151 6 PLIP interactions: 6 interactions with chain F, Hydrophobic interactions: F:V.33 Water bridges: F:K.393 Salt bridges: F:K.29, F:K.29 Metal complexes: F:H.30, F:H.70 HEC.153: 25 residues within 4Å: Chain F: Q.13, C.14, C.17, H.18, C.35, H.39, A.41, H.44, V.45, A.48, S.49, S.50, R.51, R.52, M.53, R.56, P.57, T.59, L.194, Q.275, R.276, G.277 Ligands: HEC.151, SO3.157, PG4.167 13 PLIP interactions: 13 interactions with chain F, Hydrophobic interactions: F:A.41, F:V.45, F:M.53, F:P.57 Water bridges: F:H.18, F:Q.275, F:R.276, F:R.276, F:R.278 Salt bridges: F:R.56, F:R.276 Metal complexes: F:H.18, F:H.44

9 x SO3: SULFITE ION(Non-covalent)

SO3.9: 6 residues within 4Å: Chain A: F.109, R.131, Y.303, Q.360, H.361 Ligands: HEC.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.131, A:Y.303 Water bridges: A:H.113, A:R.131, A:Y.303, A:Q.360 SO3.36: 6 residues within 4Å: Chain B: F.109, R.131, Y.303, Q.360, H.361 Ligands: HEC.28 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.131, B:Y.303, B:Y.303, B:Y.303, B:H.361 Water bridges: B:R.131 SO3.39: 7 residues within 4Å: Chain B: H.18, T.19, Q.20, I.21, F.274 Ligands: HEC.33, HEC.35 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.18, B:Q.20, B:I.21 Water bridges: B:Q.20, B:Q.275 SO3.68: 6 residues within 4Å: Chain C: F.109, R.131, Y.303, Q.360, H.361 Ligands: HEC.60 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.131, C:Y.303, C:H.361 Water bridges: C:R.131, C:Q.360, C:Q.360 SO3.95: 6 residues within 4Å: Chain D: F.109, R.131, Y.303, Q.360, H.361 Ligands: HEC.87 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:R.131, D:Y.303, D:Y.303, D:Y.303, D:H.361 Water bridges: D:R.131, D:Q.360, D:Q.360 SO3.98: 7 residues within 4Å: Chain D: H.18, T.19, Q.20, I.21, F.274 Ligands: HEC.92, HEC.94 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:H.18, D:Q.20, D:I.21 Water bridges: D:Q.20, D:Q.275 SO3.127: 6 residues within 4Å: Chain E: F.109, R.131, Y.303, Q.360, H.361 Ligands: HEC.119 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:R.131, E:H.361 Water bridges: E:R.131, E:Y.303, E:Y.303 SO3.154: 6 residues within 4Å: Chain F: F.109, R.131, Y.303, Q.360, H.361 Ligands: HEC.146 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:R.131, F:H.361 Water bridges: F:R.131, F:Y.303, F:Y.303 SO3.157: 7 residues within 4Å: Chain F: H.18, T.19, Q.20, I.21, F.274 Ligands: HEC.151, HEC.153 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:H.18, F:Q.20, F:I.21 Water bridges: F:Q.20, F:Q.275

12 x CA: CALCIUM ION(Non-covalent)

CA.10: 6 residues within 4Å: Chain A: E.302, Y.303, F.328, K.358, L.359, Q.360 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.302, A:Y.303, A:K.358, H2O.16, H2O.16 CA.11: 6 residues within 4Å: Chain A: S.84, E.115, P.116, R.117 Ligands: HEC.3, HEC.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:P.116, H2O.7, H2O.8, H2O.23 CA.37: 6 residues within 4Å: Chain B: E.302, Y.303, F.328, K.358, L.359, Q.360 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.302, B:Y.303, B:K.358, H2O.43, H2O.43 CA.38: 6 residues within 4Å: Chain B: S.84, E.115, P.116, R.117 Ligands: HEC.30, HEC.31 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:P.116, H2O.31, H2O.32, H2O.50 CA.69: 6 residues within 4Å: Chain C: E.302, Y.303, F.328, K.358, L.359, Q.360 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.302, C:Y.303, C:K.358, H2O.70, H2O.70 CA.70: 6 residues within 4Å: Chain C: S.84, E.115, P.116, R.117 Ligands: HEC.62, HEC.63 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:P.116, H2O.61, H2O.61, H2O.77 CA.96: 6 residues within 4Å: Chain D: E.302, Y.303, F.328, K.358, L.359, Q.360 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.302, D:Y.303, D:K.358, H2O.96, H2O.97 CA.97: 6 residues within 4Å: Chain D: S.84, E.115, P.116, R.117 Ligands: HEC.89, HEC.90 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:P.116, H2O.85, H2O.85, H2O.104 CA.128: 6 residues within 4Å: Chain E: E.302, Y.303, F.328, K.358, L.359, Q.360 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.302, E:Y.303, E:K.358, H2O.123, H2O.123 CA.129: 6 residues within 4Å: Chain E: S.84, E.115, P.116, R.117 Ligands: HEC.121, HEC.122 4 PLIP interactions: 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:P.116, H2O.114, H2O.114, H2O.130 CA.155: 6 residues within 4Å: Chain F: E.302, Y.303, F.328, K.358, L.359, Q.360 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.302, F:Y.303, F:K.358, H2O.150, H2O.150 CA.156: 6 residues within 4Å: Chain F: S.84, E.115, P.116, R.117 Ligands: HEC.148, HEC.149 4 PLIP interactions: 1 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:P.116, H2O.138, H2O.138, H2O.157

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 6 residues within 4Å: Chain A: H.18, T.19, Q.20, I.21, F.274 Ligands: HEC.6 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.19, A:Q.20, A:Q.20, A:I.21 Water bridges: A:C.17, A:H.18, A:H.18, A:T.19 Salt bridges: A:H.18 SO4.44: 4 residues within 4Å: Chain B: R.252, L.254, A.338, E.341 2 PLIP interactions: 2 interactions with chain B Water bridges: B:H.326 Salt bridges: B:R.252 SO4.71: 6 residues within 4Å: Chain C: H.18, T.19, Q.20, I.21, F.274 Ligands: HEC.65 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:T.19, C:Q.20, C:Q.20, C:I.21 Water bridges: C:C.17, C:H.18, C:H.18, C:T.19 Salt bridges: C:H.18 SO4.103: 4 residues within 4Å: Chain D: R.252, L.254, A.338, E.341 2 PLIP interactions: 2 interactions with chain D Water bridges: D:H.326 Salt bridges: D:R.252 SO4.130: 6 residues within 4Å: Chain E: H.18, T.19, Q.20, I.21, F.274 Ligands: HEC.124 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:T.19, E:Q.20, E:Q.20, E:I.21 Water bridges: E:C.17, E:H.18, E:H.18 Salt bridges: E:H.18 SO4.162: 4 residues within 4Å: Chain F: R.252, L.254, A.338, E.341 2 PLIP interactions: 2 interactions with chain F Water bridges: F:H.326 Salt bridges: F:R.252

6 x THJ: THIOSULFATE(Non-covalent)

THJ.13: 5 residues within 4Å: Chain A: R.457 Chain C: R.457 Chain E: R.457 Ligands: THJ.72, THJ.131 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain E, 1 interactions with chain A Water bridges: C:R.457 Salt bridges: C:R.457, E:R.457, A:R.457 THJ.40: 5 residues within 4Å: Chain B: R.457 Chain D: R.457 Chain F: R.457 Ligands: THJ.99, THJ.158 8 PLIP interactions: 3 interactions with chain D, 3 interactions with chain F, 2 interactions with chain B Water bridges: D:R.457, D:R.457, F:R.457, F:R.457, B:R.457 Salt bridges: D:R.457, F:R.457, B:R.457 THJ.72: 5 residues within 4Å: Chain A: R.457 Chain C: R.457 Chain E: R.457 Ligands: THJ.13, THJ.131 4 PLIP interactions: 1 interactions with chain C, 2 interactions with chain E, 1 interactions with chain A Salt bridges: C:R.457, E:R.457, A:R.457 Water bridges: E:R.457 THJ.99: 5 residues within 4Å: Chain B: R.457 Chain D: R.457 Chain F: R.457 Ligands: THJ.40, THJ.158 8 PLIP interactions: 3 interactions with chain F, 3 interactions with chain B, 2 interactions with chain D Water bridges: F:R.457, F:R.457, B:R.457, B:R.457, D:R.457 Salt bridges: F:R.457, B:R.457, D:R.457 THJ.131: 5 residues within 4Å: Chain A: R.457 Chain C: R.457 Chain E: R.457 Ligands: THJ.13, THJ.72 4 PLIP interactions: 1 interactions with chain E, 2 interactions with chain A, 1 interactions with chain C Salt bridges: E:R.457, A:R.457, C:R.457 Water bridges: A:R.457 THJ.158: 5 residues within 4Å: Chain B: R.457 Chain D: R.457 Chain F: R.457 Ligands: THJ.40, THJ.99 8 PLIP interactions: 3 interactions with chain D, 3 interactions with chain B, 2 interactions with chain F Water bridges: D:R.457, D:R.457, B:R.457, B:R.457, F:R.457 Salt bridges: D:R.457, B:R.457, F:R.457

15 x NA: SODIUM ION(Non-functional Binders)

NA.14: 4 residues within 4Å: Chain E: D.450 Ligands: NA.73, TRS.75, NA.132 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:D.450 Water bridges: A:D.450, E:D.450 NA.27: 2 residues within 4Å: Chain A: R.81, S.84 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.115, A:E.115 NA.41: 6 residues within 4Å: Chain B: D.450 Ligands: TRS.43, NA.100, TRS.102, NA.159, TRS.161 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.450 NA.58: 2 residues within 4Å: Chain B: R.81, S.84 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.115, B:E.115 NA.59: 3 residues within 4Å: Chain B: N.375, G.376 Ligands: PG4.50 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.375 NA.73: 4 residues within 4Å: Chain A: D.450 Ligands: NA.14, NA.132, TRS.134 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain A Water bridges: E:D.450, A:D.450 Hydrogen bonds: A:D.450 NA.86: 2 residues within 4Å: Chain C: R.81, S.84 2 PLIP interactions: 2 interactions with chain C Water bridges: C:E.115, C:E.115 NA.100: 6 residues within 4Å: Chain D: D.450 Ligands: NA.41, TRS.43, TRS.102, NA.159, TRS.161 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.450 NA.117: 2 residues within 4Å: Chain D: R.81, S.84 4 PLIP interactions: 4 interactions with chain D Water bridges: D:E.115, D:E.115, D:E.115, D:E.115 NA.118: 3 residues within 4Å: Chain D: N.375, G.376 Ligands: PG4.109 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.375 NA.132: 4 residues within 4Å: Chain C: D.450 Ligands: NA.14, TRS.16, NA.73 3 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C, 1 interactions with chain A Water bridges: E:D.450, A:D.450 Hydrogen bonds: C:D.450 NA.145: 2 residues within 4Å: Chain E: R.81, S.84 2 PLIP interactions: 2 interactions with chain E Water bridges: E:E.115, E:E.115 NA.159: 6 residues within 4Å: Chain F: D.450 Ligands: NA.41, TRS.43, NA.100, TRS.102, TRS.161 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:D.450 NA.176: 2 residues within 4Å: Chain F: R.81, S.84 4 PLIP interactions: 4 interactions with chain F Water bridges: F:E.115, F:E.115, F:E.115, F:E.115 NA.177: 3 residues within 4Å: Chain F: N.375, G.376 Ligands: PG4.168 2 PLIP interactions: 2 interactions with chain F Water bridges: F:N.375, F:N.375

24 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)(Non-functional Binders)

PG6.15: 9 residues within 4Å: Chain A: Y.309, L.311, G.314, F.345, R.348, A.354, A.355, R.469, E.470 Ligand excluded by PLIP PG6.17: 11 residues within 4Å: Chain A: A.11, M.12, F.15, H.25, A.31, T.32, N.34 Chain B: P.8, V.9, D.10 Ligands: PG6.45 Ligand excluded by PLIP PG6.19: 5 residues within 4Å: Chain A: F.333, Y.478, E.498, T.502, K.506 Ligand excluded by PLIP PG6.25: 2 residues within 4Å: Chain A: D.320, D.321 Ligand excluded by PLIP PG6.26: 8 residues within 4Å: Chain A: A.350, T.351, P.453 Chain E: W.444, K.447, V.511, S.512, N.515 Ligand excluded by PLIP PG6.42: 10 residues within 4Å: Chain B: Y.309, L.311, D.313, G.314, F.345, R.348, A.354, A.355, R.469, E.470 Ligand excluded by PLIP PG6.45: 11 residues within 4Å: Chain A: P.8, T.32, N.34 Chain B: A.11, F.15, H.25, A.31, T.32, V.33, N.34 Ligands: PG6.17 Ligand excluded by PLIP PG6.52: 2 residues within 4Å: Chain B: T.270, L.286 Ligand excluded by PLIP PG6.74: 9 residues within 4Å: Chain C: Y.309, L.311, G.314, F.345, R.348, A.354, A.355, R.469, E.470 Ligand excluded by PLIP PG6.76: 11 residues within 4Å: Chain C: A.11, M.12, F.15, H.25, A.31, T.32, N.34 Chain D: P.8, V.9, D.10 Ligands: PG6.104 Ligand excluded by PLIP PG6.78: 5 residues within 4Å: Chain C: F.333, Y.478, E.498, T.502, K.506 Ligand excluded by PLIP PG6.84: 2 residues within 4Å: Chain C: D.320, D.321 Ligand excluded by PLIP PG6.85: 8 residues within 4Å: Chain A: W.444, K.447, V.511, S.512, N.515 Chain C: A.350, T.351, P.453 Ligand excluded by PLIP PG6.101: 10 residues within 4Å: Chain D: Y.309, L.311, D.313, G.314, F.345, R.348, A.354, A.355, R.469, E.470 Ligand excluded by PLIP PG6.104: 11 residues within 4Å: Chain C: P.8, T.32, N.34 Chain D: A.11, F.15, H.25, A.31, T.32, V.33, N.34 Ligands: PG6.76 Ligand excluded by PLIP PG6.111: 2 residues within 4Å: Chain D: T.270, L.286 Ligand excluded by PLIP PG6.133: 9 residues within 4Å: Chain E: Y.309, L.311, G.314, F.345, R.348, A.354, A.355, R.469, E.470 Ligand excluded by PLIP PG6.135: 11 residues within 4Å: Chain E: A.11, M.12, F.15, H.25, A.31, T.32, N.34 Chain F: P.8, V.9, D.10 Ligands: PG6.163 Ligand excluded by PLIP PG6.137: 5 residues within 4Å: Chain E: F.333, Y.478, E.498, T.502, K.506 Ligand excluded by PLIP PG6.143: 2 residues within 4Å: Chain E: D.320, D.321 Ligand excluded by PLIP PG6.144: 8 residues within 4Å: Chain C: W.444, K.447, V.511, S.512, N.515 Chain E: A.350, T.351, P.453 Ligand excluded by PLIP PG6.160: 10 residues within 4Å: Chain F: Y.309, L.311, D.313, G.314, F.345, R.348, A.354, A.355, R.469, E.470 Ligand excluded by PLIP PG6.163: 11 residues within 4Å: Chain E: P.8, T.32, N.34 Chain F: A.11, F.15, H.25, A.31, T.32, V.33, N.34 Ligands: PG6.135 Ligand excluded by PLIP PG6.170: 2 residues within 4Å: Chain F: T.270, L.286 Ligand excluded by PLIP

6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.16: 5 residues within 4Å: Chain A: M.99 Chain C: M.99 Ligands: TRS.75, NA.132, TRS.134 7 PLIP interactions: 2 interactions with chain E, 3 interactions with chain A, 2 interactions with chain C Water bridges: E:D.450, E:D.450, A:K.102, A:D.450, A:D.450, C:K.102, C:K.102 TRS.43: 8 residues within 4Å: Chain B: M.99 Chain D: M.99 Chain F: M.99 Ligands: NA.41, NA.100, TRS.102, NA.159, TRS.161 6 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 4 interactions with chain B Water bridges: F:K.102, D:K.102, B:K.102, B:K.102, B:A.446, B:D.450 TRS.75: 5 residues within 4Å: Chain C: M.99 Chain E: M.99 Ligands: NA.14, TRS.16, TRS.134 7 PLIP interactions: 3 interactions with chain E, 2 interactions with chain A, 2 interactions with chain C Water bridges: E:K.102, E:K.102, E:D.450, A:D.450, A:D.450, C:K.102, C:D.450 TRS.102: 8 residues within 4Å: Chain B: M.99 Chain D: M.99 Chain F: M.99 Ligands: NA.41, TRS.43, NA.100, NA.159, TRS.161 6 PLIP interactions: 4 interactions with chain D, 1 interactions with chain B, 1 interactions with chain F Water bridges: D:K.102, D:K.102, D:A.446, D:D.450, B:K.102, F:K.102 TRS.134: 5 residues within 4Å: Chain A: M.99 Chain E: M.99 Ligands: TRS.16, NA.73, TRS.75 7 PLIP interactions: 3 interactions with chain E, 3 interactions with chain A, 1 interactions with chain C Water bridges: E:K.102, E:D.450, E:D.450, A:K.102, A:K.102, A:D.450, C:D.450 TRS.161: 8 residues within 4Å: Chain B: M.99 Chain D: M.99 Chain F: M.99 Ligands: NA.41, TRS.43, NA.100, TRS.102, NA.159 6 PLIP interactions: 4 interactions with chain F, 1 interactions with chain B, 1 interactions with chain D Water bridges: F:K.102, F:K.102, F:A.446, F:D.450, B:K.102, D:K.102

48 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.18: 6 residues within 4Å: Chain A: V.128, Q.138, F.139, N.141, W.142 Chain E: R.497 Ligand excluded by PLIP PG4.20: 4 residues within 4Å: Chain A: P.307, G.308, R.316, G.318 Ligand excluded by PLIP PG4.21: 4 residues within 4Å: Chain A: N.375, G.376, V.377 Ligands: HEC.5 Ligand excluded by PLIP PG4.22: 4 residues within 4Å: Chain A: R.171, F.172, L.173, S.174 Ligand excluded by PLIP PG4.23: 3 residues within 4Å: Chain A: T.270, L.286 Ligands: PG4.24 Ligand excluded by PLIP PG4.24: 5 residues within 4Å: Chain A: Q.20, D.23, M.24, V.272 Ligands: PG4.23 Ligand excluded by PLIP PG4.46: 7 residues within 4Å: Chain B: V.128, Q.138, F.139, N.141, W.142 Chain D: D.494, R.497 Ligand excluded by PLIP PG4.47: 5 residues within 4Å: Chain B: P.307, G.308, Y.309, R.316, G.318 Ligand excluded by PLIP PG4.48: 6 residues within 4Å: Chain B: T.94, S.95, R.96, E.115, K.431, H.435 Ligand excluded by PLIP PG4.49: 7 residues within 4Å: Chain B: R.51, R.52, M.53, A.205, R.276, G.277 Ligands: HEC.35 Ligand excluded by PLIP PG4.50: 5 residues within 4Å: Chain B: N.375, G.376, V.377 Ligands: HEC.32, NA.59 Ligand excluded by PLIP PG4.51: 4 residues within 4Å: Chain B: R.171, F.172, L.173, S.174 Ligand excluded by PLIP PG4.53: 4 residues within 4Å: Chain B: N.141, Q.143, K.144 Chain D: E.417 Ligand excluded by PLIP PG4.54: 5 residues within 4Å: Chain B: A.350, T.351, P.453 Chain D: K.447, N.515 Ligand excluded by PLIP PG4.55: 3 residues within 4Å: Chain B: R.60, D.62, E.64 Ligand excluded by PLIP PG4.57: 8 residues within 4Å: Chain B: A.179, A.180, N.181, C.305, N.306, P.307, M.319 Ligands: HEC.28 Ligand excluded by PLIP PG4.77: 6 residues within 4Å: Chain A: R.497 Chain C: V.128, Q.138, F.139, N.141, W.142 Ligand excluded by PLIP PG4.79: 4 residues within 4Å: Chain C: P.307, G.308, R.316, G.318 Ligand excluded by PLIP PG4.80: 4 residues within 4Å: Chain C: N.375, G.376, V.377 Ligands: HEC.64 Ligand excluded by PLIP PG4.81: 4 residues within 4Å: Chain C: R.171, F.172, L.173, S.174 Ligand excluded by PLIP PG4.82: 3 residues within 4Å: Chain C: T.270, L.286 Ligands: PG4.83 Ligand excluded by PLIP PG4.83: 5 residues within 4Å: Chain C: Q.20, D.23, M.24, V.272 Ligands: PG4.82 Ligand excluded by PLIP PG4.105: 7 residues within 4Å: Chain D: V.128, Q.138, F.139, N.141, W.142 Chain F: D.494, R.497 Ligand excluded by PLIP PG4.106: 5 residues within 4Å: Chain D: P.307, G.308, Y.309, R.316, G.318 Ligand excluded by PLIP PG4.107: 6 residues within 4Å: Chain D: T.94, S.95, R.96, E.115, K.431, H.435 Ligand excluded by PLIP PG4.108: 7 residues within 4Å: Chain D: R.51, R.52, M.53, A.205, R.276, G.277 Ligands: HEC.94 Ligand excluded by PLIP PG4.109: 5 residues within 4Å: Chain D: N.375, G.376, V.377 Ligands: HEC.91, NA.118 Ligand excluded by PLIP PG4.110: 4 residues within 4Å: Chain D: R.171, F.172, L.173, S.174 Ligand excluded by PLIP PG4.112: 4 residues within 4Å: Chain D: N.141, Q.143, K.144 Chain F: E.417 Ligand excluded by PLIP PG4.113: 5 residues within 4Å: Chain D: A.350, T.351, P.453 Chain F: K.447, N.515 Ligand excluded by PLIP PG4.114: 3 residues within 4Å: Chain D: R.60, D.62, E.64 Ligand excluded by PLIP PG4.116: 8 residues within 4Å: Chain D: A.179, A.180, N.181, C.305, N.306, P.307, M.319 Ligands: HEC.87 Ligand excluded by PLIP PG4.136: 6 residues within 4Å: Chain C: R.497 Chain E: V.128, Q.138, F.139, N.141, W.142 Ligand excluded by PLIP PG4.138: 4 residues within 4Å: Chain E: P.307, G.308, R.316, G.318 Ligand excluded by PLIP PG4.139: 4 residues within 4Å: Chain E: N.375, G.376, V.377 Ligands: HEC.123 Ligand excluded by PLIP PG4.140: 4 residues within 4Å: Chain E: R.171, F.172, L.173, S.174 Ligand excluded by PLIP PG4.141: 3 residues within 4Å: Chain E: T.270, L.286 Ligands: PG4.142 Ligand excluded by PLIP PG4.142: 5 residues within 4Å: Chain E: Q.20, D.23, M.24, V.272 Ligands: PG4.141 Ligand excluded by PLIP PG4.164: 7 residues within 4Å: Chain B: D.494, R.497 Chain F: V.128, Q.138, F.139, N.141, W.142 Ligand excluded by PLIP PG4.165: 5 residues within 4Å: Chain F: P.307, G.308, Y.309, R.316, G.318 Ligand excluded by PLIP PG4.166: 6 residues within 4Å: Chain F: T.94, S.95, R.96, E.115, K.431, H.435 Ligand excluded by PLIP PG4.167: 7 residues within 4Å: Chain F: R.51, R.52, M.53, A.205, R.276, G.277 Ligands: HEC.153 Ligand excluded by PLIP PG4.168: 5 residues within 4Å: Chain F: N.375, G.376, V.377 Ligands: HEC.150, NA.177 Ligand excluded by PLIP PG4.169: 4 residues within 4Å: Chain F: R.171, F.172, L.173, S.174 Ligand excluded by PLIP PG4.171: 4 residues within 4Å: Chain B: E.417 Chain F: N.141, Q.143, K.144 Ligand excluded by PLIP PG4.172: 5 residues within 4Å: Chain B: K.447, N.515 Chain F: A.350, T.351, P.453 Ligand excluded by PLIP PG4.173: 3 residues within 4Å: Chain F: R.60, D.62, E.64 Ligand excluded by PLIP PG4.175: 8 residues within 4Å: Chain F: A.179, A.180, N.181, C.305, N.306, P.307, M.319 Ligands: HEC.146 Ligand excluded by PLIP

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.56: 5 residues within 4Å: Chain B: N.515, I.518, D.519 Chain F: P.453, R.457 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain F Hydrophobic interactions: B:I.518, F:R.457 Water bridges: B:N.515, F:R.457 Salt bridges: F:R.457 ACT.115: 5 residues within 4Å: Chain B: P.453, R.457 Chain D: N.515, I.518, D.519 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:I.518, B:R.457 Water bridges: D:N.515, B:R.457 Salt bridges: B:R.457 ACT.174: 5 residues within 4Å: Chain D: P.453, R.457 Chain F: N.515, I.518, D.519 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:R.457, F:I.518 Water bridges: D:R.457, F:N.515 Salt bridges: D:R.457

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trofimov, A.A. et al., Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide. Acta Crystallogr.,Sect.D (2010)

Release Date

2009-12-29

Peptides

Eight-heme nitrite reductase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Eight-heme nitrite reductase

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