- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 3 x PXX: N-1,10-phenanthrolin-5-ylacetamide(Covalent)
PXX.2: 8 residues within 4Å:- Chain A: Q.41, K.42, A.43, P.53, M.58, C.59, A.62
- Ligands: NI.3
No protein-ligand interaction detected (PLIP)PXX.6: 11 residues within 4Å:- Chain A: D.73, D.74, H.77
- Chain B: Q.41, K.42, A.43, P.53, M.58, C.59, A.62
- Ligands: NI.7
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:D.73, B:A.62
PXX.10: 8 residues within 4Å:- Chain C: Q.41, K.42, A.43, P.53, M.58, C.59, A.62
- Ligands: NI.11
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:A.62
- 6 x NI: NICKEL (II) ION(Non-covalent)(Non-functional Binders)
NI.3: 2 residues within 4Å:- Chain A: K.42
- Ligands: PXX.2
No protein-ligand interaction detected (PLIP)NI.4: 2 residues within 4Å:- Chain A: A.1, D.39
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:A.1, A:D.39
NI.7: 3 residues within 4Å:- Chain A: H.77
- Chain B: K.42
- Ligands: PXX.6
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.77, H2O.1, H2O.1
NI.8: 2 residues within 4Å:- Chain B: A.1, D.39
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:A.1, B:D.39
NI.11: 1 residues within 4Å:- Ligands: PXX.10
No protein-ligand interaction detected (PLIP)NI.12: 2 residues within 4Å:- Chain C: A.1, D.39
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:A.1, C:D.39
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Radford, R.J. et al., A superprotein triangle driven by nickel(II) coordination: exploiting non-natural metal ligands in protein self-assembly. J.Am.Chem.Soc. (2009)
- Release Date
- 2009-07-14
- Peptides
- Soluble cytochrome b562: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 3 x PXX: N-1,10-phenanthrolin-5-ylacetamide(Covalent)
- 6 x NI: NICKEL (II) ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Radford, R.J. et al., A superprotein triangle driven by nickel(II) coordination: exploiting non-natural metal ligands in protein self-assembly. J.Am.Chem.Soc. (2009)
- Release Date
- 2009-07-14
- Peptides
- Soluble cytochrome b562: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
B