SMTL ID : 3foz.1

Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

22 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 3 residues within 4Å: Chain B: T.284, R.287 Chain D: A.28 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.284, B:R.287 CA.2: 1 residues within 4Å: Chain B: G.288 No protein-ligand interaction detected (PLIP) CA.3: 1 residues within 4Å: Chain C: G.70 No protein-ligand interaction detected (PLIP) CA.4: 2 residues within 4Å: Chain C: A.58, U.59 No protein-ligand interaction detected (PLIP) CA.5: 3 residues within 4Å: Chain C: U.16, C.17, G.19 No protein-ligand interaction detected (PLIP) CA.6: 3 residues within 4Å: Chain C: A.7, U.8, A.14 No protein-ligand interaction detected (PLIP) CA.7: 2 residues within 4Å: Chain C: U.59, U.60 No protein-ligand interaction detected (PLIP) CA.8: 1 residues within 4Å: Chain C: U.12 No protein-ligand interaction detected (PLIP) CA.9: 1 residues within 4Å: Chain C: G.27 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain C: G.10 No protein-ligand interaction detected (PLIP) CA.11: 1 residues within 4Å: Chain C: U.55 No protein-ligand interaction detected (PLIP) CA.12: 3 residues within 4Å: Chain D: G.19, U.42, G.43 No protein-ligand interaction detected (PLIP) CA.13: 1 residues within 4Å: Chain D: U.9 No protein-ligand interaction detected (PLIP) CA.14: 2 residues within 4Å: Chain D: A.55, U.56 No protein-ligand interaction detected (PLIP) CA.15: 3 residues within 4Å: Chain D: U.13, C.14, G.16 No protein-ligand interaction detected (PLIP) CA.16: 2 residues within 4Å: Chain D: U.56, U.57 No protein-ligand interaction detected (PLIP) CA.17: 2 residues within 4Å: Chain D: G.41, U.42 No protein-ligand interaction detected (PLIP) CA.18: 2 residues within 4Å: Chain D: A.23, G.24 No protein-ligand interaction detected (PLIP) CA.19: 1 residues within 4Å: Chain D: G.67 No protein-ligand interaction detected (PLIP) CA.20: 2 residues within 4Å: Chain D: G.68, C.69 No protein-ligand interaction detected (PLIP) CA.21: 3 residues within 4Å: Chain D: A.4, U.5, A.11 No protein-ligand interaction detected (PLIP) CA.22: 1 residues within 4Å: Chain D: U.30 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seif, E. et al., RNA-Protein Mutually Induced Fit: STRUCTURE OF ESCHERICHIA COLI ISOPENTENYL-tRNA TRANSFERASE IN COMPLEX WITH tRNA(Phe). J.Biol.Chem. (2009)

Release Date

2009-01-20

Peptides

tRNA delta(2)-isopentenylpyrophosphate transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

tRNA delta(2)-isopentenylpyrophosphate transferase

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