SMTL ID : 3fp4.1

Crystal structure of Tom71 complexed with Ssa1 C-terminal fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

hetero-1-1-mer

Ligands

11 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: R.99, A.100, N.103, D.111, A.112, D.115 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: N.108, F.109, T.110, D.111 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: T.110, E.506, K.509, I.510 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: Q.337, N.340, P.341, N.343, P.346, Y.347 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: L.86, R.99 Ligand excluded by PLIP CL.12: 7 residues within 4Å: Chain A: N.184, T.185, S.186, S.187, D.190, Y.193, N.241 Ligand excluded by PLIP CL.13: 7 residues within 4Å: Chain A: R.202, L.203, S.205, A.206, T.207, G.210, Y.211 Ligand excluded by PLIP CL.14: 6 residues within 4Å: Chain A: N.215, L.218, T.219, T.249, F.252, K.256 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain A: L.272 Ligand excluded by PLIP CL.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.17: 6 residues within 4Å: Chain A: K.371, F.374, P.375, L.377, V.380, P.381 Ligand excluded by PLIP

3 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain A: E.148, L.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.148 NA.6: 3 residues within 4Å: Chain A: S.163, S.461, Q.463 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.163, A:Q.463 NA.7: 2 residues within 4Å: Chain A: K.413, I.414 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.413

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 6 residues within 4Å: Chain A: M.113, S.117, L.138, A.507, I.510, Q.511 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.117 SO4.10: 5 residues within 4Å: Chain A: N.164, D.208, L.212, P.459, R.460 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.164 Water bridges: A:R.460 Salt bridges: A:R.460 SO4.11: 8 residues within 4Å: Chain A: G.172, E.342, N.343, V.344, Y.345, L.377, E.379, H.415 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.343, A:V.344 Water bridges: A:K.413, A:K.413 Salt bridges: A:K.413

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Molecular chaperone Hsp70/Hsp90 prepares the mitochondrial outer membrane translocon receptor Tom71 for preprotein loading. J.Biol.Chem. (2009)

Release Date

2009-07-28

Peptides

TPR repeat-containing protein YHR117W: A
Ssa1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
Q

TPR repeat-containing protein YHR117W

Ssa1

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