- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x CAC: CACODYLATE ION(Non-covalent)
CAC.2: 11 residues within 4Å:- Chain A: C.37, S.39, H.59, A.85, I.86, W.110, D.150, T.154, L.294
- Chain C: M.285
- Ligands: ZN.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.39, A:T.154
CAC.5: 11 residues within 4Å:- Chain B: C.37, S.39, H.59, A.85, I.86, W.110, D.150, T.154, L.294
- Chain D: M.285
- Ligands: ZN.4
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.39, B:D.150
CAC.12: 12 residues within 4Å:- Chain A: M.285
- Chain C: C.37, S.39, H.59, A.85, I.86, W.110, D.150, T.154, L.294
- Ligands: ZN.11, EDO.15
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.39, C:T.154
CAC.21: 12 residues within 4Å:- Chain B: M.285
- Chain D: C.37, S.39, H.59, A.85, I.86, W.110, D.150, T.154, L.294
- Ligands: ZN.20, EDO.27
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.39
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 6 residues within 4Å:- Chain B: G.98, Y.99, H.100, Q.101, H.157
- Chain D: H.287
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.98, B:H.100, B:Q.101, B:H.157
EDO.7: 3 residues within 4Å:- Chain B: P.137, D.307, F.310
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.307
EDO.9: 5 residues within 4Å:- Chain B: T.169, R.193
- Chain C: D.307
- Ligands: EDO.10, EDO.14
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:R.193
- Water bridges: C:D.307, C:D.307, C:Y.311
EDO.10: 8 residues within 4Å:- Chain B: T.169, K.234, G.235, V.236, D.237, K.257
- Chain C: R.304
- Ligands: EDO.9
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:T.169, B:G.235, B:K.257, C:R.304
EDO.14: 4 residues within 4Å:- Chain C: P.137, D.307, F.310
- Ligands: EDO.9
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.307
- Water bridges: C:Y.311
EDO.15: 8 residues within 4Å:- Chain C: C.37, S.39, T.154, V.178, V.265, N.266, Y.267
- Ligands: CAC.12
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.266, C:Y.267
EDO.16: 2 residues within 4Å:- Chain C: D.272, N.273
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Water bridges: A:D.275
- Hydrogen bonds: C:D.272, C:N.273
EDO.17: 5 residues within 4Å:- Chain A: H.287
- Chain C: Y.99, Q.101, H.157, P.296
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.101, C:Q.101
- Water bridges: C:H.157
EDO.18: 3 residues within 4Å:- Chain B: L.166
- Chain C: R.301, R.304
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:R.301, C:R.301
- Water bridges: D:Q.96
EDO.22: 6 residues within 4Å:- Chain B: H.287
- Chain D: G.98, Y.99, H.100, Q.101, H.157
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.98, D:H.100, D:Q.101, D:H.157
EDO.23: 6 residues within 4Å:- Chain A: G.167, K.234
- Chain D: L.300, E.303, R.304, D.307
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:K.234, A:K.234, D:D.307
- Water bridges: A:T.169, A:K.257, D:D.307
EDO.24: 3 residues within 4Å:- Chain D: P.137, D.307, F.310
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:D.307
EDO.25: 4 residues within 4Å:- Chain A: L.166
- Chain D: L.300, R.301, R.304
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: A:L.166, D:R.301
- Water bridges: C:Q.96
EDO.27: 7 residues within 4Å:- Chain D: C.37, T.38, S.39, V.178, V.265, Y.267
- Ligands: CAC.21
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.39, D:V.265, D:Y.267
- 2 x NO3: NITRATE ION(Non-functional Binders)
NO3.8: 4 residues within 4Å:- Chain A: R.91
- Chain B: F.25, R.91, D.128
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.91, B:D.128
- Water bridges: B:D.128
NO3.26: 5 residues within 4Å:- Chain C: F.25, R.91
- Chain D: F.25, R.91, D.128
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.91, D:D.128
- Water bridges: D:D.128
- 1 x IMD: IMIDAZOLE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.19: 6 residues within 4Å:- Chain C: P.88, D.89, S.103, A.108, G.109, K.111
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:D.89, C:A.108, C:K.111
NA.28: 6 residues within 4Å:- Chain D: P.88, D.89, S.103, A.108, G.109, K.111
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:D.89, D:A.108, D:K.111
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goihberg, E. et al., Biochemical and structural properties of chimeras constructed by exchange of cofactor-binding domains in alcohol dehydrogenases from thermophilic and mesophilic microorganisms. Biochemistry (2010)
- Release Date
- 2010-01-19
- Peptides
- NADP-dependent alcohol dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x CAC: CACODYLATE ION(Non-covalent)
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x NO3: NITRATE ION(Non-functional Binders)
- 1 x IMD: IMIDAZOLE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goihberg, E. et al., Biochemical and structural properties of chimeras constructed by exchange of cofactor-binding domains in alcohol dehydrogenases from thermophilic and mesophilic microorganisms. Biochemistry (2010)
- Release Date
- 2010-01-19
- Peptides
- NADP-dependent alcohol dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D