SMTL ID : 3fpm.2 (1 other biounit)

Crystal Structure of a Squarate Inhibitor bound to MAPKAP Kinase-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-12-mer

Ligands

12 x 793: 3-{[(1R)-1-phenylethyl]amino}-4-(pyridin-4-ylamino)cyclobut-3-ene-1,2-dione(Non-covalent)

793.1: 16 residues within 4Å: Chain A: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.39, A:T.167 Hydrogen bonds: A:L.102 793.2: 16 residues within 4Å: Chain B: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.39, B:T.167 Hydrogen bonds: B:L.102 793.3: 16 residues within 4Å: Chain C: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.39, C:T.167 Hydrogen bonds: C:L.102 793.4: 16 residues within 4Å: Chain D: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:V.39, D:T.167 Hydrogen bonds: D:L.102 793.5: 16 residues within 4Å: Chain E: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:V.39, E:T.167 Hydrogen bonds: E:L.102 793.6: 16 residues within 4Å: Chain F: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:V.39, F:T.167 Hydrogen bonds: F:L.102 793.7: 16 residues within 4Å: Chain G: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:V.39, G:T.167 Hydrogen bonds: G:L.102 793.8: 16 residues within 4Å: Chain H: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:V.39, H:T.167 Hydrogen bonds: H:L.102 793.9: 16 residues within 4Å: Chain I: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:V.39, I:T.167 Hydrogen bonds: I:L.102 793.10: 16 residues within 4Å: Chain J: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:V.39, J:T.167 Hydrogen bonds: J:L.102 793.11: 16 residues within 4Å: Chain K: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:V.39, K:T.167 Hydrogen bonds: K:L.102 793.12: 16 residues within 4Å: Chain L: L.33, G.34, N.36, G.37, V.39, A.52, K.54, M.99, E.100, C.101, L.102, E.151, N.152, L.154, T.167, D.168 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:V.39, L:T.167 Hydrogen bonds: L:L.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, F. et al., Identification and SAR of squarate inhibitors of mitogen activated protein kinase-activated protein kinase 2 (MK-2). Bioorg.Med.Chem. (2009)

Release Date

2009-04-07

Peptides

MAP kinase-activated protein kinase 2: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

MAP kinase-activated protein kinase 2

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